Anthocyanins give fruits and vegetables their red, purple, and blue colors, offering health benefits. Their biosynthesis involves specific enzymes and is regulated by the MBW complex of transcription factors. Research has linked color variations in plants to anthocyanin content and structure, with transcriptomic analyses revealing genes involved in these differences. In eggplants, SmMYB113 has been identified as a key regulator of anthocyanin biosynthesis, affecting peel color. Despite progress, the precise molecular mechanisms behind color diversity in eggplants remain unclear, indicating a need for further investigation into anthocyanin biosynthesis and regulation.
Researchers at NanJing Agricultural University explored the expression patterns of anthocyanin biosynthesis genes in eggplants of different colors and developmental stages, and found that anthocyanin biosynthesis genes were more expressed in purple eggplant varieties, especially in the rapid growth stage.
RNA seq analysis was performed on the G stage eggplant skin to identify differentially expressed genes (DEGs) related to anthocyanin and flavonoid biosynthesis. Particularly, specific genes, including SmMYB113 and WRKY44, were up-regulated in cultivars with higher delphinidin/flavonoids ratios, suggesting their involvement in color variation. Furthermore, the study uncovered 27 novel genes potentially linked to color differences and 32 novel genes within the SmMYB113-regulated anthocyanin biosynthesis network.
Notably, five genes (SmCytb5, SmGST, SmMATE, SmASAT3, and SmF3’5’M) were identified as crucial for both color variation and anthocyanin accumulation. The expression of these five genes was directly activated by SmMYB113 through yeast one-hybrid, electrophoretic mobility shift assay, and dual luciferase experiments.
A regulatory model for differences in color formation in eggplant peels

SmMYB113 regulates the activity of SmF3’5’H, which is critical for shaping variation in purple peels, by enhancing SmCytb5 expression. The acylation (ASAT and AT)/glycosylation (GT) ratio of delphinidins determines the reddish-purple and black-purple peel color. The activity of GST and MATE, which are responsible for anthocyanin transport, is also regulated by SmMYB113.
Overall, the research not only elucidates the transcriptional basis of color variation in eggplant peels but also highlights SmMYB113’s central role in regulating anthocyanin biosynthesis, offering insights for future genetic and breeding strategies to enhance fruit coloration.
Source – Eurekalert
Li J, Jiang S, Yang G, Xu Y, Li L, Yang F. (2024) RNA-sequencing analysis reveals novel genes involved in the different peel color formation in eggplant. Hortic Res 10(10):uhad181. [article]
Anthocyanins give fruits and vegetables their red, purple, and blue colors, offering health benefits. Their biosynthesis involves specific enzymes and is regulated by the MBW complex of transcription factors. Research has linked color variations in plants to anthocyanin content and structure, with transcriptomic analyses revealing genes involved in these differences. In eggplants, SmMYB113 has been identified as a key regulator of anthocyanin biosynthesis, affecting peel color. Despite progress, the precise molecular mechanisms behind color diversity in eggplants remain unclear, indicating a need for further investigation into anthocyanin biosynthesis and regulation.
Researchers at NanJing Agricultural University explored the expression patterns of anthocyanin biosynthesis genes in eggplants of different colors and developmental stages, and found that anthocyanin biosynthesis genes were more expressed in purple eggplant varieties, especially in the rapid growth stage.
RNA seq analysis was performed on the G stage eggplant skin to identify differentially expressed genes (DEGs) related to anthocyanin and flavonoid biosynthesis. Particularly, specific genes, including SmMYB113 and WRKY44, were up-regulated in cultivars with higher delphinidin/flavonoids ratios, suggesting their involvement in color variation. Furthermore, the study uncovered 27 novel genes potentially linked to color differences and 32 novel genes within the SmMYB113-regulated anthocyanin biosynthesis network.
Notably, five genes (SmCytb5, SmGST, SmMATE, SmASAT3, and SmF3’5’M) were identified as crucial for both color variation and anthocyanin accumulation. The expression of these five genes was directly activated by SmMYB113 through yeast one-hybrid, electrophoretic mobility shift assay, and dual luciferase experiments.
A regulatory model for differences in color formation in eggplant peels
SmMYB113 regulates the activity of SmF3’5’H, which is critical for shaping variation in purple peels, by enhancing SmCytb5 expression. The acylation (ASAT and AT)/glycosylation (GT) ratio of delphinidins determines the reddish-purple and black-purple peel color. The activity of GST and MATE, which are responsible for anthocyanin transport, is also regulated by SmMYB113.
Overall, the research not only elucidates the transcriptional basis of color variation in eggplant peels but also highlights SmMYB113’s central role in regulating anthocyanin biosynthesis, offering insights for future genetic and breeding strategies to enhance fruit coloration.
Source – Eurekalert
Li J, Jiang S, Yang G, Xu Y, Li L, Yang F. (2024) RNA-sequencing analysis reveals novel genes involved in the different peel color formation in eggplant. Hortic Res 10(10):uhad181. [article]
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Anthocyanins give fruits and vegetables their red, purple, and blue colors, offering health benefits. Their biosynthesis involves specific enzymes and is regulated by the MBW complex of transcription factors. Research has linked color variations in plants to anthocyanin content and structure, with transcriptomic analyses revealing genes involved in these differences. In eggplants, SmMYB113 has been identified as a key regulator of anthocyanin biosynthesis, affecting peel color. Despite progress, the precise molecular mechanisms behind color diversity in eggplants remain unclear, indicating a need for further investigation into anthocyanin biosynthesis and regulation.
Researchers at NanJing Agricultural University explored the expression patterns of anthocyanin biosynthesis genes in eggplants of different colors and developmental stages, and found that anthocyanin biosynthesis genes were more expressed in purple eggplant varieties, especially in the rapid growth stage.
RNA seq analysis was performed on the G stage eggplant skin to identify differentially expressed genes (DEGs) related to anthocyanin and flavonoid biosynthesis. Particularly, specific genes, including SmMYB113 and WRKY44, were up-regulated in cultivars with higher delphinidin/flavonoids ratios, suggesting their involvement in color variation. Furthermore, the study uncovered 27 novel genes potentially linked to color differences and 32 novel genes within the SmMYB113-regulated anthocyanin biosynthesis network.
Notably, five genes (SmCytb5, SmGST, SmMATE, SmASAT3, and SmF3’5’M) were identified as crucial for both color variation and anthocyanin accumulation. The expression of these five genes was directly activated by SmMYB113 through yeast one-hybrid, electrophoretic mobility shift assay, and dual luciferase experiments.
A regulatory model for differences in color formation in eggplant peels
SmMYB113 regulates the activity of SmF3’5’H, which is critical for shaping variation in purple peels, by enhancing SmCytb5 expression. The acylation (ASAT and AT)/glycosylation (GT) ratio of delphinidins determines the reddish-purple and black-purple peel color. The activity of GST and MATE, which are responsible for anthocyanin transport, is also regulated by SmMYB113.
Overall, the research not only elucidates the transcriptional basis of color variation in eggplant peels but also highlights SmMYB113’s central role in regulating anthocyanin biosynthesis, offering insights for future genetic and breeding strategies to enhance fruit coloration.
Source – Eurekalert
Li J, Jiang S, Yang G, Xu Y, Li L, Yang F. (2024) RNA-sequencing analysis reveals novel genes involved in the different peel color formation in eggplant. Hortic Res 10(10):uhad181. [article]
Related Posts
Single-cell and single-embryo RNA sequencing
RNA sequencing reveals functional chimeric mRNAs in mammalian immunity
Deep learning improves microRNA target prediction from sequence
Atlas of the brain’s striatum could guide researchers to new drug treatments
scLS – a computationally efficient differentially expressed gene detection algorithm
Spatial mapping of RNA turnover kinetics in the mouse brain
Immune cells offer insights on billion-dollar virus
SPIDER improves spatial transcriptomics data using single-cell RNA sequencing
Ultrafast and reference-free sequence discovery in single-cell data
ARCADIA combines RNA sequencing and spatial proteomics to reveal how tissue location shapes cell behavior
An end-to-end computational framework for “Record-seq” transcriptional recording data
A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction
ExoShorkie – predicting RNA-seq coverage of exogenous genomes in yeast by transfer learning
Dietary oxidized plant sterol shifts macrophage state to fuel aortic inflammation
Bonsai reconstructs tree representations for distortion-free visualization and exploration of high-dimensional data
MiRQuery – a user-friendly web app for the interactive analysis and visualization of microRNA sequencing data
RNA sequencing resolves cryptic pathogenic variants in mitochondrial disease
Unlocking the past – new method helps gain insights into old tissue
New RNA sequencing model improves sequencing depth planning for UMI transcriptomics
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