RNA sequencing reveals high metabolism is an early sign of Alzheimer’s disease

An early phase in the process of developing Alzheimer’s disease is a metabolic increase in a part of the brain called the hippocampus, report researchers from Karolinska Institutet in a study published in Molecular Psychiatry. The discovery opens up for new potential methods of early intervention.

Alzheimer’s disease is the most common form of dementia and strikes about 20,000 people in Sweden every year. Researchers now show that a metabolic increase in the mitochondria, the cellular power plants, is an early indicator of the disease.

The teams behind the study used mice that developed Alzheimer’s disease pathology in a similar way to humans. The increase in metabolism in young mice was followed by synaptic changes caused by disruption to the cellular recycling system (a process known as autophagy), a finding that was awarded the Nobel Prize in Physiology or Medicine in 2016.

After a time, metabolism in the Alzheimer brain usually declines, which contributes to the degradation of synapses. This the researchers could also see in the older mice, which had had the disease for longer time.

“The disease starts to develop 20 years before the onset of symptoms, so it’s important to detect it early – especially given the retardant medicines that are starting to arrive,” says Per Nilsson, researcher at the Department of Neurobiology, Care Sciences and Society, Karolinska Institutet. “Metabolic changes can be a diagnostic factor in this.”

Maria Ankarcrona, researcher at the same department continues: “Interestingly, changes in metabolism can be seen before any of the characteristic insoluble plaques have accumulated in the brain. The different energy balance tallies with what we’ve seen in images of the Alzheimer brain, but we’ve now detected these changes at an earlier stage.”

The study was conducted in close partnership between both researchers’ groups, who analysed the part of the mouse brain called the hippocampus, a structure that plays an important part in short-term memory and that is affected early in the pathological process.

RNA sequencing was used

Applying the technique of RNA sequencing to see which genes are active in the cells of the hippocampus during different stages of the disease, the researchers discovered that one of the early stages of the disease is an increase in mitochondrial metabolism.

The researchers studied the changes that then appeared in the synapses between the brain’s neurons using electron microscopy and other techniques, and found that vesicles called autophagosomes, whereby spent proteins are broken down and their components metabolised, had accumulated in the synapses, disrupting access to functioning proteins.

Transcriptome profiling identified Aβ-induced alterations in genes and pathways
in hippocampus of App knock-in mice

Fig. 1

A Hippocampi were dissected from two-, six- and 12-month-old AppNL-G-F mice and six-, 12- and 18-month-old AppNL-F mice and age matched WT controls (n = 3/genotype). RNA was extracted from dissected hippocampi and cDNA libraries were synthesized. RNA sequencing was performed by a Hiseq 3000 sequencer. Validation studies were performed by RT-qPCR using the same RNA samples used for RNA sequencing. Western blotting with hippocampal brain homogenate and Olink proteomics were conducted for validations at protein level. Mitochondria and crude synaptosomal fraction were isolated for mechanistic studies of mitochondrial and autophagic functions. Mitochondrial dysfunction and autophagic alterations were revealed by electron microscopy. B t-SNE plot representing difference of AppNL-F, AppNL-G-F and WT transcriptomes. Each symbol represents one mouse individual. Each color represents one mouse genotype, red: AppNL-F, blue: AppNL-G-F, gray: WT, and each shape of symbol represents mouse age, circle: two-month-old, triangle: six-month-old, inverted triangle: 12-month-old, square: 18-month-old. C Venn diagram of significantly DEGs in AppNL-F and AppNL-G-F vs WT mice (FDR < 0.1). D Volcano plots of the gene expression profiles in different time points of AppNL-F or AppNL-G-F vs WT mice. Red and blue dots indicate significantly up- and downregulated genes (FDR < 0.1), respectively, in App knock-in mice. Grey dots indicate non-significantly altered genes. Genes validated by RT-qPCR are highlighted. E Heatmap of selected pathways related to AD, glucose metabolism, neuroinflammation and autophagy in AppNL-F vs WT mice (columns 1 to 3), AppNL-G-F vs WT mice (columns 4 to 6) and AppNL-F vs AppNL-G-F mice (columns 7 and 8). The p-value of each enriched pathway was converted to a Z score. Significantly up- and downregulated pathways have the absolute value of Z scores ≥ 1.96.

The researchers will now be studying the role of mitochondria and autophagy in the development of Alzheimer’s disease in more detail – for example, in mice whose disease provides an even better model of the Alzheimer brain.

“These findings highlight the importance of retaining functional mitochondria and normal protein metabolism,” says Dr Nilsson. “Going forward, we’ll be able to do tests on mice to see if new molecules that stabilise mitochondrial and autophagic function can retard the disease.”

SourceKarolinska Institutet

Naia L, Shimozawa M, Bereczki E, Li X, Liu J, Jiang R, Giraud R, Leal NS, Pinho CM, Berger E, Falk VL, Dentoni G, Ankarcrona M, Nilsson P. (2023) Mitochondrial hypermetabolism precedes impaired autophagy and synaptic disorganization in App knock-in Alzheimer mouse models. Mol Psychiatry [Epub ahead of print]. [article]

Leave a Reply

Your email address will not be published. Required fields are marked *


Time limit is exhausted. Please reload CAPTCHA.