scRNA-seq – Introduction to single cell RNA-seq data analysis

In this lecture you will learn:

  • How does scRNA-seq work and what can go wrong (empties, doublets, dropouts…)
  • What is a UMI and why do we use them
  • Why is scRNA-seq data challenging to analyze
  • What are the main analysis steps for clustering cells and finding cluster marker genes
  • What is Seurat

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