Myofibroblasts generate fibrotic scars after spinal cord injury (SCI). This is typically regarded as an impediment to nerve regeneration. Understanding the heterogeneous characteristics of fibrotic scars might help to develop strategies for remodeling fibrotic scars after SCI. However, the composition, origin and function of fibrotic scars have been a subject of ongoing debate in the field.
A recent study led by Profs. DAI Jianwu and ZHAO Yannan from the Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences employed a combination of lineage tracing and single-cell RNA sequencing (scRNA-seq) to demonstrate the heterogeneous distribution, source, and function of meningeal fibroblasts and perivascular fibroblasts in fibrotic scars.
Previous studies have reported that in non-penetrating spinal cord injuries, myofibroblasts primarily originate from perivascular fibroblasts (PF), whereas in penetrating spinal cord injuries, they mainly arise from meningeal fibroblasts (MF).
However, certain studies suggested that in both penetrating and non-penetrating spinal cord injuries, myofibroblasts in fibrotic scars predominantly originate from GLAST+ type A pericytes.
Prior research demonstrated that the complete removal of fibrous scars often results in a large cavity and is not conducive to injury repair. Conversely, a partial reduction of scars can enhance axon regeneration and functional recovery, suggesting the existence of heterogeneity in the function of fibrous scars following SCI.
“Given that PDFGRβ is expressed in both pericytes and fibroblasts, we used PDFGRβ-CreER::R26-TdTomato transgenic mice to enrich PDFGRβ+ cells before and after SCI,” said Professor DAI.
ScRNA-seq analysis revealed that PDFGRβ+ cells encompassed pericytes/vSMCs and fibroblasts, with the fibroblasts transforming into myofibroblasts after SCI.
The team employed Col1a2-CreER::R26-TdT mice to label fibroblasts, NG2-CreER::R26-TdT, and Myh11-CreER::R26 mice to track the cell fate of pericytes/vSMCs.
Their results further corroborated the contribution of fibroblasts to fibrotic scar formation and ruled out the contribution of pericytes/vSMCs.
Fibroblasts were subsequently classified into Crabp2/Emb+ meningeal fibroblasts (CA-F) and Lama1/Lama2+ pia/perivascular fibroblasts (LA-F) based on the defined markers. Immunostaining indicated that LA-F was located in the parenchymal perivascular space and the meninges inside of CE-F in the uninjured spinal cord.
After either transection or crush SCI, CE-F was distributed in the core of the fibrotic scar, surrounded by LA-F. Lineage tracing using Crabp2-CreER::R26-TdT mice confirmed the heterogeneous distribution of LA-F and MF-derived CE-F following SCI. CA-F expressed elevated levels of cholesterol synthesis-related genes and extracellular matrix genes Col1a1 and Fn1, while LA-F highly expressed extracellular matrix genes such as Col4a1 and Lama1.
This phenomenon was conserved between mice and monkeys.
Schematic summarization of heterogeneous contribution of PDGFRβ cells
and their progeny in fibrotic scar after transection and crush SCI

A In the intact spinal cord, there are two types of fibroblasts, meningeal CE-F in dura and arachnoid, and LA-F in the pia and parenchyma. Pericytes/vSMCs are mainly located around blood vessels in spinal cord parenchyma. B After SCI, CE-F and LA-F migrate into the lesion core and generate ECM. CE-F express higher levels of Col1 and Fibronectin, and LA-F express higher levels of Col IV and Laminin. CE-F are active in cholesterol synthesis, and LA-F are involved in lipid transportation/storage and angiogenesis. CE-F and LA-F exhibit a specific spatial distribution within the fibrotic scar region, where LA-F are found on the lateral side of CE-F. Pericytes/vSMCs contribute little to the fibrotic scar formation.
Additionally, scRNA-seq analysis and in vitro experiments demonstrated that LA-F was implicated in lipid transport and angiogenesis.
The study clarified the heterogeneity in the cellular composition, origin, distribution, and function of fibrotic scars after spinal cord injury, providing answers to longstanding scientific inquiries in this field and establishing a theoretical foundation for the specific regulation of fibrotic scars.
Source – Chinese Academy of Sciences
Myofibroblasts generate fibrotic scars after spinal cord injury (SCI). This is typically regarded as an impediment to nerve regeneration. Understanding the heterogeneous characteristics of fibrotic scars might help to develop strategies for remodeling fibrotic scars after SCI. However, the composition, origin and function of fibrotic scars have been a subject of ongoing debate in the field.
A recent study led by Profs. DAI Jianwu and ZHAO Yannan from the Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences employed a combination of lineage tracing and single-cell RNA sequencing (scRNA-seq) to demonstrate the heterogeneous distribution, source, and function of meningeal fibroblasts and perivascular fibroblasts in fibrotic scars.
Previous studies have reported that in non-penetrating spinal cord injuries, myofibroblasts primarily originate from perivascular fibroblasts (PF), whereas in penetrating spinal cord injuries, they mainly arise from meningeal fibroblasts (MF).
However, certain studies suggested that in both penetrating and non-penetrating spinal cord injuries, myofibroblasts in fibrotic scars predominantly originate from GLAST+ type A pericytes.
Prior research demonstrated that the complete removal of fibrous scars often results in a large cavity and is not conducive to injury repair. Conversely, a partial reduction of scars can enhance axon regeneration and functional recovery, suggesting the existence of heterogeneity in the function of fibrous scars following SCI.
ScRNA-seq analysis revealed that PDFGRβ+ cells encompassed pericytes/vSMCs and fibroblasts, with the fibroblasts transforming into myofibroblasts after SCI.
The team employed Col1a2-CreER::R26-TdT mice to label fibroblasts, NG2-CreER::R26-TdT, and Myh11-CreER::R26 mice to track the cell fate of pericytes/vSMCs.
Their results further corroborated the contribution of fibroblasts to fibrotic scar formation and ruled out the contribution of pericytes/vSMCs.
Fibroblasts were subsequently classified into Crabp2/Emb+ meningeal fibroblasts (CA-F) and Lama1/Lama2+ pia/perivascular fibroblasts (LA-F) based on the defined markers. Immunostaining indicated that LA-F was located in the parenchymal perivascular space and the meninges inside of CE-F in the uninjured spinal cord.
After either transection or crush SCI, CE-F was distributed in the core of the fibrotic scar, surrounded by LA-F. Lineage tracing using Crabp2-CreER::R26-TdT mice confirmed the heterogeneous distribution of LA-F and MF-derived CE-F following SCI. CA-F expressed elevated levels of cholesterol synthesis-related genes and extracellular matrix genes Col1a1 and Fn1, while LA-F highly expressed extracellular matrix genes such as Col4a1 and Lama1.
This phenomenon was conserved between mice and monkeys.
Schematic summarization of heterogeneous contribution of PDGFRβ cells
and their progeny in fibrotic scar after transection and crush SCI
A In the intact spinal cord, there are two types of fibroblasts, meningeal CE-F in dura and arachnoid, and LA-F in the pia and parenchyma. Pericytes/vSMCs are mainly located around blood vessels in spinal cord parenchyma. B After SCI, CE-F and LA-F migrate into the lesion core and generate ECM. CE-F express higher levels of Col1 and Fibronectin, and LA-F express higher levels of Col IV and Laminin. CE-F are active in cholesterol synthesis, and LA-F are involved in lipid transportation/storage and angiogenesis. CE-F and LA-F exhibit a specific spatial distribution within the fibrotic scar region, where LA-F are found on the lateral side of CE-F. Pericytes/vSMCs contribute little to the fibrotic scar formation.
Additionally, scRNA-seq analysis and in vitro experiments demonstrated that LA-F was implicated in lipid transport and angiogenesis.
The study clarified the heterogeneity in the cellular composition, origin, distribution, and function of fibrotic scars after spinal cord injury, providing answers to longstanding scientific inquiries in this field and establishing a theoretical foundation for the specific regulation of fibrotic scars.
Source – Chinese Academy of Sciences
Xue X, Wu X, Fan Y, Han S, Zhang H, Sun Y, Yin Y, Yin M, Chen B, Sun Z, Zhao S, Zhang Q, Liu W, Zhang J, Li J, Shi Y, Xiao Z, Dai J, Zhao Y.(2024) Heterogeneous fibroblasts contribute to fibrotic scar formation after spinal cord injury in mice and monkeys. Nat Commun 15(1):6321. [article]
Related Posts
Benchmarking RNA sequencing for more accurate alternative splicing analysis
RNA Sequencing identifies new tick-borne virus that causes flu-like illness
Small RNA sequencing reveals regulatory roles for sdRNAs in acute myeloid leukemia
POND-seq enables non-destructive RNA sequencing in living cells
Worm’s radical transformation shows metamorphosis can change the functions of cells
New method allows scientists to follow gene activity over time in the same cells
Single-cell and single-embryo RNA sequencing
RNA sequencing reveals functional chimeric mRNAs in mammalian immunity
Deep learning improves microRNA target prediction from sequence
Atlas of the brain’s striatum could guide researchers to new drug treatments
scLS – a computationally efficient differentially expressed gene detection algorithm
Spatial mapping of RNA turnover kinetics in the mouse brain
Immune cells offer insights on billion-dollar virus
SPIDER improves spatial transcriptomics data using single-cell RNA sequencing
Ultrafast and reference-free sequence discovery in single-cell data
ARCADIA combines RNA sequencing and spatial proteomics to reveal how tissue location shapes cell behavior
An end-to-end computational framework for “Record-seq” transcriptional recording data
A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction
ExoShorkie – predicting RNA-seq coverage of exogenous genomes in yeast by transfer learning
Dietary oxidized plant sterol shifts macrophage state to fuel aortic inflammation
Myofibroblasts generate fibrotic scars after spinal cord injury (SCI). This is typically regarded as an impediment to nerve regeneration. Understanding the heterogeneous characteristics of fibrotic scars might help to develop strategies for remodeling fibrotic scars after SCI. However, the composition, origin and function of fibrotic scars have been a subject of ongoing debate in the field.
A recent study led by Profs. DAI Jianwu and ZHAO Yannan from the Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences employed a combination of lineage tracing and single-cell RNA sequencing (scRNA-seq) to demonstrate the heterogeneous distribution, source, and function of meningeal fibroblasts and perivascular fibroblasts in fibrotic scars.
Previous studies have reported that in non-penetrating spinal cord injuries, myofibroblasts primarily originate from perivascular fibroblasts (PF), whereas in penetrating spinal cord injuries, they mainly arise from meningeal fibroblasts (MF).
However, certain studies suggested that in both penetrating and non-penetrating spinal cord injuries, myofibroblasts in fibrotic scars predominantly originate from GLAST+ type A pericytes.
Prior research demonstrated that the complete removal of fibrous scars often results in a large cavity and is not conducive to injury repair. Conversely, a partial reduction of scars can enhance axon regeneration and functional recovery, suggesting the existence of heterogeneity in the function of fibrous scars following SCI.
ScRNA-seq analysis revealed that PDFGRβ+ cells encompassed pericytes/vSMCs and fibroblasts, with the fibroblasts transforming into myofibroblasts after SCI.
The team employed Col1a2-CreER::R26-TdT mice to label fibroblasts, NG2-CreER::R26-TdT, and Myh11-CreER::R26 mice to track the cell fate of pericytes/vSMCs.
Their results further corroborated the contribution of fibroblasts to fibrotic scar formation and ruled out the contribution of pericytes/vSMCs.
Fibroblasts were subsequently classified into Crabp2/Emb+ meningeal fibroblasts (CA-F) and Lama1/Lama2+ pia/perivascular fibroblasts (LA-F) based on the defined markers. Immunostaining indicated that LA-F was located in the parenchymal perivascular space and the meninges inside of CE-F in the uninjured spinal cord.
After either transection or crush SCI, CE-F was distributed in the core of the fibrotic scar, surrounded by LA-F. Lineage tracing using Crabp2-CreER::R26-TdT mice confirmed the heterogeneous distribution of LA-F and MF-derived CE-F following SCI. CA-F expressed elevated levels of cholesterol synthesis-related genes and extracellular matrix genes Col1a1 and Fn1, while LA-F highly expressed extracellular matrix genes such as Col4a1 and Lama1.
This phenomenon was conserved between mice and monkeys.
Schematic summarization of heterogeneous contribution of PDGFRβ cells
and their progeny in fibrotic scar after transection and crush SCI
A In the intact spinal cord, there are two types of fibroblasts, meningeal CE-F in dura and arachnoid, and LA-F in the pia and parenchyma. Pericytes/vSMCs are mainly located around blood vessels in spinal cord parenchyma. B After SCI, CE-F and LA-F migrate into the lesion core and generate ECM. CE-F express higher levels of Col1 and Fibronectin, and LA-F express higher levels of Col IV and Laminin. CE-F are active in cholesterol synthesis, and LA-F are involved in lipid transportation/storage and angiogenesis. CE-F and LA-F exhibit a specific spatial distribution within the fibrotic scar region, where LA-F are found on the lateral side of CE-F. Pericytes/vSMCs contribute little to the fibrotic scar formation.
Additionally, scRNA-seq analysis and in vitro experiments demonstrated that LA-F was implicated in lipid transport and angiogenesis.
The study clarified the heterogeneity in the cellular composition, origin, distribution, and function of fibrotic scars after spinal cord injury, providing answers to longstanding scientific inquiries in this field and establishing a theoretical foundation for the specific regulation of fibrotic scars.
Source – Chinese Academy of Sciences
Xue X, Wu X, Fan Y, Han S, Zhang H, Sun Y, Yin Y, Yin M, Chen B, Sun Z, Zhao S, Zhang Q, Liu W, Zhang J, Li J, Shi Y, Xiao Z, Dai J, Zhao Y.(2024) Heterogeneous fibroblasts contribute to fibrotic scar formation after spinal cord injury in mice and monkeys. Nat Commun 15(1):6321. [article]
Related Posts
Benchmarking RNA sequencing for more accurate alternative splicing analysis
RNA Sequencing identifies new tick-borne virus that causes flu-like illness
Small RNA sequencing reveals regulatory roles for sdRNAs in acute myeloid leukemia
POND-seq enables non-destructive RNA sequencing in living cells
Worm’s radical transformation shows metamorphosis can change the functions of cells
New method allows scientists to follow gene activity over time in the same cells
Single-cell and single-embryo RNA sequencing
RNA sequencing reveals functional chimeric mRNAs in mammalian immunity
Deep learning improves microRNA target prediction from sequence
Atlas of the brain’s striatum could guide researchers to new drug treatments
scLS – a computationally efficient differentially expressed gene detection algorithm
Spatial mapping of RNA turnover kinetics in the mouse brain
Immune cells offer insights on billion-dollar virus
SPIDER improves spatial transcriptomics data using single-cell RNA sequencing
Ultrafast and reference-free sequence discovery in single-cell data
ARCADIA combines RNA sequencing and spatial proteomics to reveal how tissue location shapes cell behavior
An end-to-end computational framework for “Record-seq” transcriptional recording data
A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction
ExoShorkie – predicting RNA-seq coverage of exogenous genomes in yeast by transfer learning
Dietary oxidized plant sterol shifts macrophage state to fuel aortic inflammation
Stay Connected
Submit a Post to the Blog
Recent Posts
Subscribe to the RNA-Seq Blog
RNA-Seq Products & Services