Strand Scientific

Strand Scientific – Avadis NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes standard differential expression analysis for a variety of experiment conditions, as well as differential splicing analysis. It supports novel discovery steps including identifying novel genes and exons and novel splice junctions. It includes the ability to detect variants in the transcriptome, and the ability to detect gene fusions for cancer samples. Further downstream analysis such as GO, pathway analysis, etc can be performed on the set of interesting genes.

http://www.avadis-ngs.com/applications/rna_seq