Tag Archives: analysis pipeline

To use next-generation sequencing technology such as RNA-seq for medical and health applications, choosing proper analysis methods for biomarker identification remains a critical challenge for most users...

Researchers from the Institute of Experimental Biology and Technology, Portugal introduce miRPursuit, a pipeline developed for running end-to-end analyses of high-throughput small RNA...

Single-cell RNA sequencing (scRNA-Seq) is an increasingly popular platform to study heterogeneity at the single-cell level. Computational methods to process scRNA-Seq have limited accessibility to bench scientists as they require significant amounts of bioinformatics skills. Researchers at the University of ...

Single-cell RNA-sequencing (scRNA-seq) allows whole transcriptome profiling of thousands of individual cells, enabling the molecular exploration of tissues at the cellular level. Such analytical capacity is of great interest to many research groups in the world, yet these groups often ...

Sequencing of transcribed RNA molecules (RNA-seq) has been used wildly for studying cell transcriptomes in bulk or at the single-cell level and is becoming the de facto technology for investigating gene expression level changes in various biological conditions, on the ...

Single-cell RNA sequencing (scRNA-seq) is an increasingly popular platform to study heterogeneity at the single cell level. Computational methods to process scRNA-seq have limited accessibility to bench scientists, as they require significant amount of bioinformatics skills. Researchers from the University of ...

Major advances in sequencing technology have contributed to the ability to examine complex patterns of genome activity in a wide range of organisms that are extensively used for comparative physiology, ecology and evolution, environmental monitoring, and commercial aquaculture. Relative to ...

Background: Docker (https://www.docker.com) is an application that packages binary executables and scripts into modules (containers) with their software dependencies. Containers can be freely mixed and matched to form workflows that give identical results on any platform which supports Docker. The ...

Researchers studying the viruses that affect agricultural production or human health now have a new tool for investigating where viruses have spread, on a local, national, or even global scale. VirusDetect is a free, open-source bioinformatics pipeline that can efficiently ...

Upcoming release of GenomePilot™ 4.0 with RNA-Seq Capabilities Appistry, a leading provider of solutions that simplify the analysis of next-generation sequencing (NGS) data, announced today extensions to their product line of genomics software solutions. The upcoming release of GenomePilot™ 4.0 ...