aRNApipe – A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments

July 1, 2016 Leave a comment 3,229 Views

The wide range of RNA-seq applications and their high computational needs require the development of pipelines orchestrating the entire workflow and optimizing usage of available computational resources. Researchers at the HudsonAlpha Institute for Biotechnology have developed aRNApipe, a project-oriented pipeline ...

RNA-Seq Blog Transcriptome Research & Industry News

Tag Archives: aRNApipe

aRNApipe – A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments

spSeudoMap – cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data

SoCube – an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data

Quantabio adds powerful bead booster chemistry to ultra-fast sparQ RNA-Seq HMR kit

SiT – spatial isoform transcriptomics

Analysis of single-cell rna-seq data

AllenDigger – spatial expression data visualization, spatial heterogeneity delineation, and single-cell registration based on the Allen Brain Atlas

New research identifies an inaccuracy in the single cell GENCODE gene model