Tag Archives: ATAC-seq

SparK: Publication-Quality NGS plotting tool

While there are sophisticated resources available for displaying NGS data, including the Integrative Genomics Viewer (IGV) and the UCSC genome browser, exporting regions and assembling figures for publication remains challenging. In particular, customizing track appearance and overlaying track replicates is ...

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CSBB – Computational Suite for Bioinformaticians and Biologists

Version3.0 is now available for download !! Download CSBB-v3.0 from GitHub or Source Forge : GitHub : https://github.com/csbbcompbio/CSBB-v3.0 Source Forge: https://sourceforge.net/projects/csbb-v3-0/?source=navbar Major Highlights of version 3.0: *RNA-Seq processing for human, mouse, frog and zebrafish *ChIP-Seq processing for human, mouse and frog *ATAC-Seq ...

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Fine-mapping cellular QTLs with RASQUAL and ATAC-seq

When cellular traits are measured using high-throughput DNA sequencing, quantitative trait loci (QTLs) manifest as fragment count differences between individuals and allelic differences within individuals. Researchers from the Wellcome Trust Sanger Institute have developed RASQUAL (Robust Allele-Specific Quantitation and Quality Control), ...

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