Tag Archives: automation

Arkas – Rapid reproducible RNA-Seq analysis

rna-seq

The recently introduced Kallisto pseudoaligner has radically simplified the quantification of transcripts in RNA-sequencing experiments.  Researchers from the Keck School of Medicine of USC offer cloud-scale RNAseq pipelines Arkas-Quantification, which deploys Kallisto for parallel cloud computations, and Arkas-Analysis, which annotates ...

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Implementation of an Open Source Software solution for Laboratory Information Management and automated RNA-seq data analysis

rna-seq

Large-scale cancer genomics initiatives and next-generation sequencing for transcriptome profiling allow for detailed molecular characterization of tumors, and provide opportunities for clinical tools to improve diagnosis, prognosis, and treatment decisions. Laboratory information, data management, and data sharing in large-scale genomics ...

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Automated next generation sequencing

rna-seq

Beckman Coulter Life Sciences is offering automated methods to improve processes and throughput in next generation sequencing (NGS) sample preparation through a partnership with New England Biolabs (NEB). Under the agreement, Beckman Coulter will develop, distribute and support automation for NEB’s ...

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