Single-cell RNA sequencing (scRNA-seq) data are noisy and sparse. Here, UPENN researchers show that transfer learning across datasets remarkably improves data quality. By coupling a deep autoencoder with a Bayesian model, SAVER-X extracts...
Read More »A flexible Bayesian method for detecting allelic imbalance in RNA-seq data
One method of identifying cis regulatory differences is to analyze allele-specific expression (ASE) and identify cases of allelic imbalance (AI). RNA-seq is the most common way to measure ASE and a binomial test is often applied to determine statistical significance ...
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