Differential transcript usage from RNA-seq data – isoform pre-filtering improves performance of count-based methods

August 27, 2015 Leave a comment 6,024 Views

Large-scale sequencing of cDNA (RNA-seq) has been a boon to the quantitative analysis of transcriptomes. A notable application is the detection of changes in transcript usage between experimental conditions. For example, discovery of pathological alternative splicing may allow the development ...

RNA-Seq Blog Transcriptome Research & Industry News

Tag Archives: bin definitions

Differential transcript usage from RNA-seq data – isoform pre-filtering improves performance of count-based methods

Live-seq – sequencing a cell without killing it

CellRegMap – a statistical framework for mapping context-specific regulatory variants using scRNA-seq

TGIRT sequencing reveals abundant non-microRNA-small RNAs in BLCA tumor samples

totRNAseq – high-throughput muscle fiber typing from RNA sequencing data

THRONE – a new approach for accurate prediction of human RNA N7-methylguanosine sites

Pan-cancer single-cell RNA-sequencing analysis reveals cancer cell states recur across tumor types

BoT-Net – a lightweight bag of tricks-based neural network for efficient LncRNA–miRNA interaction prediction