quanTIseq – estimate the fractions of ten different immune cell types from RNA-Seq data

May 30, 2019 Leave a comment 3,986 Views

Researchers from Medical University of Innsbruck introduce quanTIseq, a method to quantify the fractions of ten immune cell types from bulk RNA-sequencing data. quanTIseq was extensively validated in blood and tumor samples using simulated, flow...

RNA-Seq Improves Immunoscoring

March 8, 2016 Leave a comment 2,948 Views

The Cancer Genome Atlas (TCGA) is primarily oriented towards revealing the status of cancer cells but TCGA RNASeq data have the potential of representing gene expression for a variety of cells that are included during RNA preparation, i.e., cells that ...

RNA-Seq Blog Transcriptome Research & Industry News

Tag Archives: Cancer immunology

quanTIseq – estimate the fractions of ten different immune cell types from RNA-Seq data

RNA-Seq Improves Immunoscoring

LACE-seq – global profiling of RNA-binding protein target sites

Researchers publish first transcriptomic study of decompression sickness

Microfluidic platform accelerates tissue processing into single cells for molecular analysis and primary culture models

Bias in RNA-seq Library Preparation

Identifying differentially expressed circular RNAs associated with DNA methylation change

Single-cell RNA sequencing reveals how kidney cancer develops and responds to treatment

ppcseq – probabilistic outlier identification for RNA sequencing generalized linear models