FusionScan – prediction of fusion genes from RNA-Seq data

October 16, 2019 Leave a comment 1,923 Views

Identification of fusion gene is of prominent importance in cancer research field because of their potential as carcinogenic drivers. RNA sequencing (RNA-Seq) data have been the most useful source for identification of fusion transcripts. Although a number of algorithms have ...

Acfs – circRNA identification and quantification from RNA-Seq data

December 12, 2016 Leave a comment 3,829 Views

Circular RNAs (circRNAs) are a group of single-stranded RNAs in closed circular form. They are splicing-generated, widely expressed in various tissues and have functional implications in development and diseases. To facilitate genome-wide characterization of circRNAs using RNA-Seq data, researchers from ...

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Tag Archives: chromosomal translocation

FusionScan – prediction of fusion genes from RNA-Seq data

Acfs – circRNA identification and quantification from RNA-Seq data

scGNN – a novel graph neural network framework for single-cell RNA-Seq analyses

Model-based deep embedding for constrained clustering analysis of single cell RNA-seq data

Novel guidelines help select optimal deconvolution method

An RNA-Seq framework for profiling target selectivity and physiological effects of antisense peptide nucleic acids (PNAs)

Single cell sequencing unravels molecular identity of rare renal cell types

SMIXnorm – fast and accurate RNA-Seq data normalization for FFPE Samples

TEA-seq – simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility