Tag Archives: CoGe

Pegasus – a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer


The extraordinary success of imatinib in the treatment of BCR-ABL1 associated cancers underscores the need to identify novel functional gene fusions in cancer. RNA sequencing offers a genome-wide view of expressed transcripts, uncovering biologically functional gene fusions. Although several bioinformatics ...

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RNA-Seq with EPIC-CoGe in 3 minutes


This video tutorial shows how to clean and map RNA-Seq data to any genome in CoGe. This includes generating BAM files, quantitating reads per position across a genome, and generating FPKM for genes. These data can be kept private and ...

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