MapReduce based K-mer clustering as the first step of de novo transcriptome assembly

November 7, 2017 Leave a comment 4,764 Views

De novo transcriptome assembly is an important technique for understanding gene expression in non-model organisms. Many de novo assemblers using the de Bruijn graph of a set of the RNA sequences rely on in-memory representation of this graph. However, current ...

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MapReduce based K-mer clustering as the first step of de novo transcriptome assembly

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