Interesting Times in RNA Sequencing

February 2, 2016 Leave a comment 3,681 Views

A multi-institution research group jointly led by Professor Jan Prins and UNC CS alumna Professor Jinze Liu at the University of Kentucky is developing algorithms and software to analyze RNA using high-throughput sequencers. The software is in use in multiple ...

A survey of software for genome-wide discovery of differential splicing in RNA-Seq data

January 24, 2014 Leave a comment 8,625 Views

Alternative splicing is a major contributor to cellular diversity. Therefore the identification and quantification of differentially spliced transcripts in genome-wide transcript analysis is an important consideration. Here, JE Hooper reviews the software available for analysis of RNA-Seq data for differential ...

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Tag Archives: DiffSplice

Interesting Times in RNA Sequencing

A survey of software for genome-wide discovery of differential splicing in RNA-Seq data

Learning to predict RNA sequence expressions from whole slide images

CRIC-seq – global profiling of in-situ RNA–RNA contacts associated with a specific RNA-binding protein

Novel machine-learning algorithm creates atlas of cancer with potential as universal diagnostic platform

Long noncoding RNA profiling may be effective for stratification in pediatric AML

spSeudoMap – cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data

SoCube – an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data

Quantabio adds powerful bead booster chemistry to ultra-fast sparQ RNA-Seq HMR kit