CAGEfightR – analysis of 5′-end data using R/Bioconductor

October 9, 2019 Leave a comment 1,953 Views

5′-end sequencing assays, and Cap Analysis of Gene Expression (CAGE) in particular, have been instrumental in studying transcriptional regulation. 5′-end methods provide genome-wide maps of...

The dark matter of the cancer genome has been largely neglected

March 23, 2016 Leave a comment 4,458 Views

Cancer is a disease of the genome caused by oncogene activation and tumor suppressor gene inhibition. Deep sequencing studies including large consortia such as TCGA and ICGC identified numerous tumor-specific mutations not only in protein-coding sequences but also in non-coding ...

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Tag Archives: enhancer

CAGEfightR – analysis of 5′-end data using R/Bioconductor

The dark matter of the cancer genome has been largely neglected

A virtual reality platform to visualize and analyze single-cell RNA sequencing data

Analysis workflow for publicly available RNA-sequencing datasets

circFL-seq – identification and quantification of full-length circRNAs for large-scale screening of functional circRNAs

Performances of targeted RNA sequencing for the analysis of fusion transcripts, gene mutation, and expression

RNA sequencing study receives Creative Representations of Research Impact Award

Two cancer research studies demonstrate use of RNA sequencing for precision oncology

Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling