Organizer – UC Davis Bioinformatics Core Aug. 29, 2016, 9 a.m. – Sept. 2, 2016, 5 p.m. This workshop will include a rich collection of lectures and hands-on sessions, covering both theory and tools. We will explore the basics of ...
Read More »Capture RNA-seq for degraded and clinical RNA
RNA-seq by poly(A) selection is currently the most common protocol for whole transcriptome sequencing as it provides a broad, detailed, and accurate view of the RNA landscape. Unfortunately, the utility of poly(A) libraries is greatly limited when the input RNA ...
Read More »Omics Pipe – A Computational Framework for Reproducible Multi-Omics Data Analysis
Omics Pipe is a computational framework for reproducible multi-omics data analysis that supports several next generation sequencing best practice pipelines, such as RNA-seq, miRNA-seq, Exome-seq, whole genome-seq and ChIP-seq. The purpose of Omics Pipe is to provide researchers with an ...
Read More »Veridical – Validation of predicted mRNA splicing mutations using high-throughput transcriptome data
Interpretation of variants present in complete genomes or exomes reveals numerous sequence changes, only a fraction of which are likely to be pathogenic. Mutations have been traditionally inferred from allele frequencies and inheritance patterns in such data. Variants predicted to ...
Read More »