JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

July 28, 2014 Comments Off on JAGuaR: Junction Alignments to Genome for RNA-Seq Reads 5,179 Views

JAGuaR is an alignment protocol for RNA-seq reads that uses an extended reference to increase alignment sensitivity. It uses BWA to align reads to the genome and reference transcript models (including annotated exon-exon junctions) specifically allowing for the possibility of ...

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JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

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