Sequencing studies on non-model organisms often interrogate both genomes and transcriptomes with massive amounts of short sequences. Such studies require de novo analysis tools and techniques...
Read More »The exon quantification pipeline (EQP) – a comprehensive approach to the quantification of gene, exon and junction expression from RNA-seq data
The quantification of transcriptomic features is the basis of the analysis of RNA-seq data. Researchers at the Novartis Institutes for Biomedical Research have developed an integrated alignment workflow and a simple counting-based approach to derive estimates for gene, exon and ...
Read More »The hidden treasure in RNA-seq
from Phys.org Michael Stadler and his team at the Friedrich Miescher institute for Biomedical Research (FMI) have developed a novel computational approach to analyze RNA-seq data. By comparing intronic and exonic RNA reads, this approach allows discerning the contribution of ...
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