Human preimplantation development is a complex process involving dramatic changes in transcriptional architecture. For a better understanding of their time-spatial development, it is indispensable to identify...
Read More »Using supervised learning methods for gene selection in RNA-Seq case-control studies
Whole transcriptome studies typically yield large amounts of data, with expression values for all genes or transcripts of the genome. The search for genes...
Read More »geneSurv – An interactive web-based tool for survival analysis in genomics research
Survival analysis methods are often used in cancer studies. It has been shown that the combination of clinical data with genomics increases the predictive performance of survival analysis methods. But, this leads to a high-dimensional data problem. Fortunately, new methods ...
Read More »SCell – integrated analysis of single-cell RNA-seq data
Analysis of the composition of heterogeneous tissue has been greatly enabled by recent developments in single-cell transcriptomics. Researchers from UCSF have developed SCell, an integrated software tool for quality filtering, normalization, feature selection, iterative dimensionality reduction, clustering and the estimation ...
Read More »Disease Biomarker Query from RNA-Seq Data
As a revolutionary way to unveil transcription, RNA-Seq technologies are challenging bioinformatics for its large data volumes and complexities. A large number of computational models have been proposed for differential expression (DE) analysis and normalization from different standing points. However, ...
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