From 2019-09-08 to 2019-09-08 - In this training course, we provide a summary of the applications of Next Generation Sequencing (NGS) technologies in the clinical context. These are presented through a hands-on session on RNA-Seq data analysis, following...
Read More »miCloud: a bioinformatics cloud for seamless execution of complex NGS data analysis pipelines
The availability of low-cost small-factor sequencers, such as the Illumina MiSeq, MiniSeq, or iSeq, have paved the way for democratizing genomics sequencing, providing researchers in minority universities with...
Read More »sRNAPipe – a Galaxy-based pipeline for bioinformatic in-depth exploration of small RNAseq data
The field of small RNA is one of the most investigated research areas since they were shown to regulate transposable elements and gene...
Read More »NGS Course – RNA-seq data analysis, 2017 (7th edition)
Date November 6-8, 2017 Location Venue: Universiteit Leiden – Faculty Social Sciences (FSW), Wassenaarseweg 52, 2333 AK Leiden Room: 1A-21 Course coordinators Peter-Bram ‘t Hoen (LUMC), Leon Mei (LUMC), Jan Oosting (LUMC), Szymon Kielbasa (LUMC) and Celia van Gelder (BioSB) Course ...
Read More »Galaxy Community Conference – 2017
GCC2017 is the 8th annual gathering of the Galaxy community Hosted in Montpellier, France June 26-30, 2017 Galaxy Community Conferences are an opportunity to participate in presentations, discussions, demos, poster sessions, lightning talks and birds-of-a-feather gatherings, all about high-throughput biology and the tools ...
Read More »A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses
Next-generation sequencing (NGS) allows ultra-deep sequencing of nucleic acids. The use of sequence-independent amplification of viral nucleic acids without utilization of target-specific primers provides advantages over traditional sequencing methods and allows detection of unsuspected variants and co-infecting agents. However, NGS ...
Read More »RNA-seq analysis with Galaxy, using advanced workflows
Galaxy Community Conference 2016, Indiana University – Bloomington | https://gcc2016.iu.edu/ https://gcc16.sched.com/event/cc2dcaf…
Read More »Quick Demo of Galaxy Bioinformatics Tools – RNA-Seq Pipeline Example
BioIT Core
Read More »Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants
Aug. 29, 2016, 9 a.m. – Sept. 2, 2016, 5 p.m. Organizer – Bioinformatics Core Contact – UC Davis Bioinformatics Core, bioinformatics.core@ucdavis.edu This workshop will include a rich collection of lectures and hands-on sessions, covering both theory and tools. We ...
Read More »Analysis and Visualization of ChIP-Seq and RNA-Seq Sequence Alignments Using ngs.plot
The continual maturation and increasing applications of next-generation sequencing technology in scientific research have yielded ever-increasing amounts of data that need to be effectively and efficiently analyzed and innovatively mined for new biological insights. Researchers at the Icahn School of ...
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