Tag Archives: galaxy

Organizer – UC Davis Bioinformatics Core Aug. 29, 2016, 9 a.m. – Sept. 2, 2016, 5 p.m. This workshop will include a rich collection of lectures and hands-on sessions, covering both theory and tools. We will explore the basics of ...

Using Galaxy for Analysis of RNA-Seq and ChIP-Seq Data Organizer – Bioinformatics Core June 13, 2016, 9 a.m. – June 17, 2016, 5 p.m. This workshop will include a rich collection of lectures and hands-on sessions, covering both theory and ...

GCC2016 is the 7th annual gathering of the Galaxy community The 2016 Galaxy Community Conference (GCC2016) will be held June 25-29 at Indiana University in Bloomington, Indiana, United States. The conference will include keynotes, accepted talks, poster sessions, birds-of-a-feather meetups, ...

With the recent advent of RNA-seq technology the proteomics community has begun to generate sample-specific protein databases for peptide and protein identification, an approach we call proteomics informed by transcriptomics (PIT). This approach has gained a lot of interest, particularly ...

Import a CummeRbund database object into R from cuffdiff output using galaxy and produce some basic plots.

Variations in sample quality are frequently encountered in small RNA-sequencing experiments, and pose a major challenge in a differential expression analysis. Removal of high variation samples reduces noise, but at a cost of reducing power, thus limiting our ability to ...

Bioinformatica Universidad Distrital

Current practice in mass spectrometry (MS)-based proteomics is to identify peptides by comparison of experimental mass spectra with theoretical mass spectra derived from a reference protein database; however, this strategy necessarily fails to detect peptide and protein sequences that are ...

End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due to a lack ...

Event: > 1st Galaxy Australasia Workshop Start: March 24, 2014 End: March 25, 2014 Cost: Free Category: Training Contact: Australian Bioinformatics Network Venue: MBI Auditorium (Building 220) Address: Monash University, Melbourne, Australia Dr Mark Crowe, our Training and Outreach Manager, ...