Tag Archives: gene expression analysis

RNA-Seq has supplanted microarrays as the preferred method of transcriptome-wide identification of differentially expressed genes. However, RNA-Seq analysis is still rapidly evolving, with a large number of tools available for each of the three major processing steps: read alignment, expression ...

The species-specific plant Pathway Genome Databases (PGDBs) based on the BioCyc platform provide a conceptual model of the cellular metabolic network of an organism. Such frameworks allow analysis of the genome-scale expression data to understand changes in the overall metabolisms ...

VIENNA, Austria and RIJSWIJK, The Netherlands, Oct. 19, 2016 /PRNewswire/ — Today Lexogen, a transcriptomics and next generation sequencing company, announces collaboration with Bluebee, a leading provider of high-performance genomics solutions, for implementation of QuantSeq data analysis pipeline on the Bluebee ...

Arabidopsis thaliana is a long established model species for plant molecular biology, genetics and genomics, and studies of A.thaliana gene function provide the basis for formulating hypotheses and designing experiments involving other plants, including economically important species. A comprehensive understanding ...

Nowadays, knowledge extraction methods from Next Generation Sequencing data are highly requested. In this work, researchers at the National Research Council, Italy focus on RNA-seq gene expression analysis and specifically on case-control studies with rule-based supervised classification algorithms that build ...

This study compared the performance of five commercially available kits in extracting total RNA from small eukaryotic tissue samples (<15 mg). Total RNA was isolated from fathead minnow (Pimephales promelas) tissues (spleen, blood, kidney, embryo, and larvae) using the Qiagen RNeasy® ...

“Sailfish” Method Could Pay Dividends as Genomic Medicine Expands Contact: Byron Spice  / 412-268-9068  / bspice@cs.cmu.edu PITTSBURGH—With gene expression analysis growing in importance for both basic researchers and medical practitioners, researchers at Carnegie Mellon University and the University of Maryland ...