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Tag Archives: GRID-seq

GRID-seq reveals the global RNA-chromatin interactome

October 4, 2017 Leave a comment 5,003 Views

rna-seq

Higher eukaryotic genomes are bound by a large number of coding and non-coding RNAs, but approaches to comprehensively map the identity and binding sites of these RNAs are lacking. Here UCSD researchers report a method to capture in situ global ...

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Recent RNA-SEQ Pubs

Mapping of a major QTL controlling plant height using a high-density genetic map and QTL-seq methods based on whole-genome resequencing in Brassica napus
9 April 2021
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9 April 2021
Cold stress triggers premature fruit abscission through ABA-dependent signal transduction in early developing apple
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(1)H NMR Metabolomics and Full-Length RNA-Seq Reveal Effects of Acylated and Nonacylated Anthocyanins on Hepatic Metabolites and Gene Expression in Zucker Diabetic Fatty Rats
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VvHDZ28 positively regulate SA biosynthesis during seed abortion in Thompson Seedless
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Nanopore RNA Sequencing Analysis
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What is RNA-Seq?

long RNAs are first converted into a library of cDNA fragments through either RNA fragmentation or DNA fragmentation. Sequencing adaptors (blue) are subsequently added to each cDNA fragment and a short sequence is obtained from each cDNA using high-throughput sequencing technology. The resulting sequence reads are aligned with the reference genome or transcriptome, and classified as three types: exonic reads, junction reads and poly(A) end-reads. These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009)


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    NanoSINC-seq dissects the isoform diversity in subcellular compartments of single cells

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