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Tag Archives: IBET

miRPursuit – a pipeline for automated analyses of small RNAs in model and nonmodel plants

February 8, 2018 Leave a comment 2,852 Views

rna-seq

Researchers from the Institute of Experimental Biology and Technology, Portugal introduce miRPursuit, a pipeline developed for running end-to-end analyses of high-throughput small RNA...

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Recent RNA-SEQ Pubs

Altered circular RNA expression profiles in an ovalbumin-induced murine model of allergic rhinitis
28 February 2021
Analysis of the transcriptomic, metabolomic, and gene regulatory responses to Puccinia sorghi in maize
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SPARC inhibition accelerates NAFLD-associated hepatocellular carcinoma development by dysregulating hepatic lipid metabolism
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PARP1-RNA interaction analysis: PARP1 regulates the expression of extracellular matrix-related genes in HK-2 renal proximal tubular epithelial cells
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Characterizing Escherichia coli's transcriptional response to different styrene exposure modes reveals novel toxicity and tolerance insights
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Bovine neonate is deficient in innate immunity at birth
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What is RNA-Seq?

long RNAs are first converted into a library of cDNA fragments through either RNA fragmentation or DNA fragmentation. Sequencing adaptors (blue) are subsequently added to each cDNA fragment and a short sequence is obtained from each cDNA using high-throughput sequencing technology. The resulting sequence reads are aligned with the reference genome or transcriptome, and classified as three types: exonic reads, junction reads and poly(A) end-reads. These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009)


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    scRNA-Seq reveals a new type of bone cell that may uncover therapeutic targets for a range of skeletal diseases

    11 hours ago
  • rna-seq

    DEBKS – a tool to detect differentially expressed circular RNA

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    Seven Bridges Selected by Pfizer to Support Data Management Solution for Single-Cell RNA Sequencing Data

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