IRcall and IRclassifier – for flexible detection of intron retention events from RNA-Seq data

February 26, 2015 Leave a comment 5,938 Views

The emergence of next-generation RNA sequencing (RNA-Seq) provides tremendous opportunities for researchers to analyze alternative splicing on a genome-wide scale. However, accurate detection of intron retention (IR) events from RNA-Seq data has remained an unresolved challenge in next-generation sequencing (NGS) ...

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

March 24, 2014 Leave a comment 8,632 Views

RNA-seq data is currently underutilized, in part because it is difficult to predict the functional impact of alternate transcription events. Recent software improvements in full-length transcript deconvolution prompted researchers from the University of Copenhagen to develop spliceR, an R package ...

RNA-Seq Blog Transcriptome Research & Industry News

Tag Archives: intron retention

IRcall and IRclassifier – for flexible detection of intron retention events from RNA-Seq data

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

Learning to predict RNA sequence expressions from whole slide images

CRIC-seq – global profiling of in-situ RNA–RNA contacts associated with a specific RNA-binding protein

Novel machine-learning algorithm creates atlas of cancer with potential as universal diagnostic platform

Long noncoding RNA profiling may be effective for stratification in pediatric AML

spSeudoMap – cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data

SoCube – an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data

Quantabio adds powerful bead booster chemistry to ultra-fast sparQ RNA-Seq HMR kit