Tag Archives: kallisto

Obtaining RNA-seq measurements involves a complex data analytical process with a large number of competing algorithms as options. There is much debate about which of these methods provides the best approach. Unfortunately, it is currently difficult to evaluate their performance ...

A brief introduction to the Sleuth R Shiny app for doing exploratory data analysis of your RNA-Seq data. This tutorial assumes that the data have been already quantified with kallisto and processed into a sleuth object with the sleuth r ...

Researchers from the University of California, Berkeley  and the University of Iceland have developed kallisto, an RNA-seq quantification program that is two orders of magnitude faster than previous approaches and achieves similar accuracy. Kallisto pseudoaligns reads to a reference, producing ...

from Bits of DNA by Lior Pachter Today my student Harold Pimentel released the beta version of his new RNA-Seq analysis method and software program called sleuth. A sleuth for RNA-Seq begins with the quantification of samples with kallisto, and together a sleuth ...