Long intergenic noncoding RNAs (lincRNAs) have risen to prominence in cancer biology as new biomarkers of disease. Those lincRNAs transcribed from active cis-regulatory elements (enhancers) have provided mechanistic insight into cis-acting...
Read More »RNA-Seq identifies long noncoding RNA as a key regulator of inflammation
New findings add to growing evidence that previously dismissed "junk DNA" actually produces RNA molecules with important regulatory functions Scientists have identified an RNA molecule with broad powers to regulate the body's inflammatory...
Read More »Bioinformatics for Novel Long Intergenic Noncoding RNA (lincRNA) Identification
Long intergenic noncoding RNAs (lincRNAs) , which are larger than 200 nucleotides and transcribed from the intergenic regions of protein coding genes, have been shown by accumulating findings to be widely expressed and extensively functional in many cellular processes. Nevertheless, ...
Read More »Long intergenic non-coding RNA expression signature in human breast cancer
Breast cancer is a complex disease, characterized by gene deregulation. There is less systematic investigation of the capacity of long intergenic non-coding RNAs (lincRNAs) as biomarkers associated with breast cancer pathogenesis or several clinicopathological variables including receptor status and patient ...
Read More »The dark matter of the cancer genome has been largely neglected
Cancer is a disease of the genome caused by oncogene activation and tumor suppressor gene inhibition. Deep sequencing studies including large consortia such as TCGA and ICGC identified numerous tumor-specific mutations not only in protein-coding sequences but also in non-coding ...
Read More »Researchers use RNA-Seq to show that lincRNAs can also contribute to HER2+ breast cancers
Ahmad M. Khalil, PhD, knew the odds were against him — as in thousands upon thousands to one. Yet he and his team never wavered from their quest to identify the parts of the body responsible for revving up one ...
Read More »Long Intergenic Non-Coding RNAs (LincRNAs) Identified by RNA-Seq
In an attempt to find breast cancer tissue and respective adjacent normal tissue were studied for the expression of lincRNAs by RNA-seq. Among the 538 lincRNAs studied, 124 lincRNAs were exclusively expressed in cancer adjacent tissues and 62 lincRNAs were ...
Read More »Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material
Advantages of RNA-Seq over array based platforms are quantitative gene expression and discovery of expressed single nucleotide variants (eSNVs) and fusion transcripts from a single platform, but the sensitivity for each of these characteristics is unknown. Researchers at the Mayo Clinic ...
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