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Tag Archives: LinTIMaT

LinTIMaT – a novel statistical learning approach for tracing cell lineage

June 22, 2020 1 Comment 1,533 Views

rna-seq

Our body consists of numerous cells that are functioning continuously to keep us alive. Even though the cells in different organs contain almost similar DNA, they can perform different functions. While the cells perform different functions, their...

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RNA-SEQ & COVID-19

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Recent RNA-SEQ Pubs

Establishment of a Cuscuta campestris-mediated enrichment system for genomic and transcriptomic analyses of 'Candidatus Liberibacter asiaticus'
3 March 2021
The transcriptome characteritics of vestibular organs from delayed endolymphatic hydrops patients(Menieres disease)
3 March 2021
Effects of neonatal exposure to methoxychlor on corpus luteum in gilts: A transcriptomic analysis
3 March 2021
Transcriptomic and physiological responses of the tropical reef calcified macroalga Amphiroa fragilissima to elevated temperature
3 March 2021
The type 2 asthma mediator IL-13 inhibits SARS-CoV-2 infection of bronchial epithelium
3 March 2021
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2
3 March 2021

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What is RNA-Seq?

long RNAs are first converted into a library of cDNA fragments through either RNA fragmentation or DNA fragmentation. Sequencing adaptors (blue) are subsequently added to each cDNA fragment and a short sequence is obtained from each cDNA using high-throughput sequencing technology. The resulting sequence reads are aligned with the reference genome or transcriptome, and classified as three types: exonic reads, junction reads and poly(A) end-reads. These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009)


RNA-Seq

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    New algorithm identifies ‘escaping’ cells in single-cell CRISPR screens

    44 mins ago
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    RNA sequencing brings hope for endangered wild cats

    2 hours ago
  • rna-seq

    Mim-tRNAseq – A method that accurately measures the abundance and modification status of different tRNAs

    1 day ago
  • rna-seq

    Uncovering the Anti-Myeloma Resistance Files

    1 day ago
  • Long term and short-term effects of RNA fixation on Single Cell RNA Sequencing

    2 days ago
  • rna-seq

    Single cell RNA sequencing opens new avenues for eradicating leukaemia at its source

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    2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

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