Extracellular RNAs (exRNAs) in biofluids have attracted great interest as potential biomarkers. Although extracellular microRNAs in blood plasma are extensively characterized, extracellular...
Read More »Long non-coding RNA may play a key role in cardiovascular disease
Mouse model helped team find MAARS lncRNA, which may contribute to atherosclerotic plaque buildup Atherosclerosis is marked by the buildup of inflammatory cells which narrow arteries to the...
Read More »LncExpDB – an expression database of human long non-coding RNAs
Expression profiles of long non-coding RNAs (lncRNAs) across diverse biological conditions provide significant insights into their biological functions, interacting targets as well as transcriptional reliability. However, there lacks a comprehensive resource that systematically characterizes the expression landscape of human lncRNAs ...
Read More »New sequencing technology will show how lncRNA regulates gene activity
The discovery of a huge number of long non-protein coding RNAs, aka lncRNAs, in the mammalian genome was a major surprise of the recent large-scale genomics projects. An international team including a bioinformatician from the Research Center...
Read More »Detection of RNA-DNA binding sites in long noncoding RNAs
Long non-coding RNAs (lncRNAs) can act as scaffolds that promote the interaction of proteins, RNA, and DNA. There is increasing evidence of sequence-specific interactions of lncRNAs with DNA via...
Read More »LncPipe: A Nextflow-based pipeline for identification and analysis of long non-coding RNAs from RNA-Seq data
Recently, long noncoding RNA molecules (lncRNA) captured widespread attentions for its critical roles in diverse biological process and important implications in variety of human diseases and cancers...
Read More »RNA-Seq reveals the long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications
To date, a comprehensive characterization of the dynamic landscape of lncRNAs during the neuroendocrine transdifferentiation (NEtD) process has not been performed. A temporal analysis of the...
Read More »circlncRNAnet – An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs
Despite their lack of protein-coding potential, lncRNAs and circRNAs have emerged as key determinants in gene regulation, acting to fine-tune transcriptional and signaling output. These non-coding...
Read More »lncScore – alignment-free identification of long noncoding RNA from assembled novel transcripts
RNA-Seq based transcriptome assembly has been widely used to identify novel lncRNAs. However, the best-performing transcript reconstruction methods merely identified 21% of full-length protein-coding transcripts from H. sapiens. Those partial-length protein-coding transcripts are more likely to be classified as lncRNAs ...
Read More »Identification and function annotation of long intervening noncoding RNAs from RNA-Seq data
RNA-seq technology offers the promise of rapid comprehensive discovery of long intervening noncoding RNAs (lincRNAs). Basic tools such as Tophat and Cufflinks have been widely used for RNA-seq assembly. However, advanced bioinformatics methodologies that allow in-depth analysis of lincRNAs are ...
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