Age-associated deterioration of cellular physiology leads to pathological conditions. The ability to detect premature aging could provide a window for preventive therapies against age-related diseases. However, the techniques for determining cellular age are limited, as they rely on a limited ...
Read More »Open source machine learning tool for analysis of RNA-seq data could help choose cancer drugs
The selection of a first-line chemotherapy drug to treat many types of cancer is often a clear-cut decision governed by standard-of-care protocols, but...
Read More »Machine learning tool predicts peptides’ potential as immune activators from RNA-Seq data
A deep neural network algorithm called BOTA uses bacterial genomes to identify unrecognized bacterial antigens. The immune system keeps T cells under...
Read More »Machine learning meets genome assembly
With the recent advances in DNA sequencing technologies, the study of the genetic composition of living organisms has become more accessible for researchers. Several advances have been achieved because of it, especially in the health sciences. However, many challenges which ...
Read More »A mew machine learning-based framework for mapping uncertainty analysis in RNA-Seq read alignment and gene expression estimation
One of the main benefits of using modern RNA-Sequencing (RNA-Seq) technology is the more accurate gene expression estimations compared with previous generations of expression data, such as the microarray. However, numerous issues can result...
Read More »How does normalization impact RNA-seq disease diagnosis?
With the surge of next generation high-throughput technologies, RNA-seq data is playing an increasingly important role in disease diagnosis, in which normalization is assumed as an essential...
Read More »RNA-seq assistant – machine learning based methods to identify more transcriptional regulated genes
Although different quality controls have been applied at different stages of the sample preparation and data analysis to ensure both reproducibility and reliability of RNA-seq results, there are still limitations and bias on the detectability for certain differentially expressed genes ...
Read More »eq-ImmuCC – cell-ventric view of tissue transcriptome measuring cellular compositions of immune microenvironment from mouse RNA-Seq data
The RNA sequencing approach has been broadly used to provide gene-, pathway-, and network-centric analyses for various cell and tissue samples. However, thus far, rich cellular information carried in tissue samples has not been thoroughly characterized from RNA-Seq data. Therefore, ...
Read More »Identification of a nasal brush-based classifier of asthma by machine learning analysis of RNAseq data
Study flow for the identification of a nasal brush-based classifier of asthma by machine learning analysis of RNAseq data. One hundred and ninety subjects with mild/moderate asthma and controls...
Read More »Machine Learning for Transcriptomic Data Workshops
Machine Learning proved to be an effective approach to detection of patterns in large datasets, feature selection and classification. However, NGS Transcriptomic data has unique challenges for processing and preparation for these methods and selecting the right approaches to avoid ...
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