Through mathematical modeling and collaboration with scientists at the University of California San Francisco (UCSF), McGill researchers, including Rached Alkallas, graduate student in the Department of Human Genetics and the primary author of the seminal study published in Nature Communications, ...
Read More »Researchers detect new mechanism in Alzheimer’s disease from RNA-Seq data
Rate of RNA decay could be a key to breakdown in communication between neurons McGill University researchers have discovered a cellular mechanism that may contribute to the breakdown of communication between neurons in Alzheimer’s disease. Their study, published in Nature ...
Read More »RNA-Seq as a Tool to Study the Tumor Microenvironment
The transcriptome is composed of different types of RNA molecules including mRNAs, tRNAs, rRNAs, and other noncoding RNAs that are found inside a cell at a given time. Analyzing transcriptome patterns can shed light on the functional state of the ...
Read More »Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations
To assess the performance of the Oxford Nanopore Technologies MinION sequencing platform, researchers from McGill University sequenced cDNAs from the External RNA Controls Consortium (ERCC) RNA Spike-In mix. This mix mimics mammalian mRNA species and consists of 92 polyadenylated transcripts ...
Read More »Microfluidic Single Cell Exome seq and RNA seq analysis of Tumor Composition
Ioannis (Jiannis) Ragoussis – Microfluidic Single Cell Exome seq and RNA seq analysis of Tumor Composition Human breast tumors have been shown to exhibit extensive inter- and intra-tumor heterogeneity. While recent advances in genomic technologies have allowed us to deconvolute ...
Read More »miRNet – dissecting miRNA-target interactions and functional associations through network-based visual analysis
MicroRNAs (miRNAs) can regulate nearly all biological processes and their dysregulation is implicated in various complex diseases and pathological conditions. Recent years have seen a growing number of functional studies of miRNAs using high-throughput experimental technologies, which have produced a ...
Read More »Tools for small RNA biomarker discovery using RNA-Seq
Small ncRNAs (sncRNAs) offer great hope as biomarkers of disease and response to treatment. This has been highlighted in the context of several medical conditions such as cancer, liver disease, cardiovascular disease, and central nervous system disorders, among many others. ...
Read More »