Next-generation deep sequencing (NGS) has provided the ability to profile miRNA in biological fluids making this approach a viable screening tool to detect miRNA biomarkers. However, collection and handling procedures of blood needs to be greatly improved for miRNA analysis ...
Read More »Next-generation sequencing data considered alone are limited for assessing the absolute copy number of microRNA transcripts
Researchers from Université de Tours, France analyzed the effect of small RNA library preparation and sequencing on the miRNA frequencies obtained from the same RNA samples collected during MDV-1 infection of chicken at different steps of the oncoviral pathogenesis. Qualitative and ...
Read More »Extending the sRNAome of Apple by Next-Generation Sequencing
The global importance of apple as a fruit crop necessitates investigations into molecular aspects of the processes that influence fruit quality and yield, including plant development, fruit ripening and disease resistance. In order to study and understand biological processes it ...
Read More »TargetRNA2 – identifying targets of small regulatory RNAs in bacteria
Many small, noncoding RNAs (sRNAs) in bacteria act as posttranscriptional regulators of messenger RNAs. TargetRNA2 is a web server that identifies mRNA targets of sRNA regulatory action in bacteria. As input, TargetRNA2 takes the sequence of an sRNA and the ...
Read More »cGRNB – combinatorial Gene Regulatory Networks Builder
We are witnessing rapid progress in the development of methodologies for building the combinatorial gene regulatory networks involving both TFs (Transcription Factors) and miRNAs (microRNAs). There are a few tools available to do these jobs but most of them are ...
Read More »Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing
In plants, microRNAs (miRNAs) are endogenous ~22 nt RNAs that play important regulatory roles in many aspects of plant biology, including metabolism, hormone response, epigenetic control of transposable elements, and stress response. Extensive studies of miRNAs have been performed in ...
Read More »The MicroRNA Expression Signature of Bladder Cancer by Deep Sequencing
Current genome-wide microRNA (miRNA) expression signature analysis using deep sequencing technologies can drive the discovery of novel cancer pathways regulated by oncogenic and/or tumor suppressive miRNAs. Researchers at Kagoshima University, Japan determined the genome-wide miRNA expression signature in bladder cancer ...
Read More »Robust global microRNA expression profiling using next-generation sequencing technologies
miRNAs are a class of regulatory molecules involved in a wide range of cellular functions, including growth, development and apoptosis. Given their widespread roles in biological processes, understanding their patterns of expression in normal and diseased states will provide insights ...
Read More »Visualization of MicroRNA Sequence Data Analysis
Visualization of MicroRNA Sequence Data Analysis Mayuko C. Inoue
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