The majority of lung cancer deaths are caused by metastatic disease. MicroRNAs (miRNAs) are posttranscriptional regulators of gene expression and miRNA dysregulation can contribute to metastatic progression. Here, researchers from Aarhus University used small RNA sequencing to profile the miRNA ...
Read More »MirSTP – identifying active miRNA TSSs from nascent transcriptomes generated by global run-on sequencing (GRO-seq)
The genome-wide identification of microRNA transcription start sites (miRNA TSSs) is essential for understanding how miRNAs are regulated in development and disease. In this study, researchers from Vanderbilt University School of Medicine developed mirSTP (mirna transcription Start sites Tracking Program), ...
Read More »RNA-Seq uncovers key to cold tolerance of zebrafish
A team at National Taiwan University, led by Prof Shyh-Jye Lee of the Department of Life Science and director of the Research Center for Developmental Biology and Regenerative Medicine, have demonstrated that microRNAs (miRNAs) regulate the cold response of fish. ...
Read More »Visual Display of 5p-arm and 3p-arm miRNA Expression with a Mobile Application
MicroRNAs (miRNAs) play important roles in human cancers. In previous studies, researchers at the National Yang-Ming University have demonstrated that both 5p-arm and 3p-arm of mature miRNAs could be expressed from the same precursor and we further interrogated the 5p-arm ...
Read More »Researchers employ microRNA sequencing in effort to control spread of mosquito viruses
RIVERSIDE, Calif. – The mosquito Aedes aegypti, which can spread dengue fever, chikungunya, Zika fever, and yellow fever virus, requires a blood meal to develop eggs. One way to control the spread of these diseases is to tamper with the ...
Read More »Binarized analysis of isomiR profiles from RNA-Seq data can discriminate among cancers
Isoforms of human miRNAs (isomiRs) are constitutively expressed with tissue- and disease-subtype-dependencies. Researchers from Thomas Jefferson University studied 10 271 tumor datasets from The Cancer Genome Atlas (TCGA) to evaluate whether isomiRs can distinguish amongst 32 TCGA cancers. Unlike previous ...
Read More »miRquant 2.0 – an Expanded Tool for Accurate Annotation and Quantification of MicroRNAs and their isomiRs from Small RNA-Sequencing Data
Small non-coding RNAs, in particular microRNAs, are critical for normal physiology and are candidate biomarkers, regulators, and therapeutic targets for a wide variety of diseases. There is an ever-growing interest in the comprehensive and accurate annotation of microRNAs across diverse ...
Read More »miRandb – a resource of online services for miRNA research
Recent discovery of thousands of small and large noncoding RNAs, in parallel to technical improvements enabling scientists to study the transcriptome in much higher depth, has resulted in massive data generation. This burst of information prompts the development of easily ...
Read More »iSmaRT – a toolkit for a comprehensive analysis of small RNA-Seq data
The interest in investigating the biological roles of small non-coding RNAs (sncRNAs) is increasing, due to the pleiotropic effects of these molecules exert in many biological contexts. While several methods and tools are available to study microRNAs (miRNAs), only few ...
Read More »Post-doctoral fellowship available – computational biology/integrative genomics
The position is in the Channing Division of Network Medicine at Brigham and Women’s Hospital and Harvard Medical School, Boston, MA. Brigham and Women’s Hospital is consistently ranked one of the top 10 hospitals in the United States, and the ...
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