miRCat2 – Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

April 14, 2017 Leave a comment 4,610 Views

MicroRNAs are a class of _21-22 nucleotide small RNAs which are excised from a stable hairpin-like secondary structure. They have important gene regulatory functions and are involved in many pathways including developmental timing, organogenesis and development in eukaryotes. There are ...

miRPlant – an integrated tool for identification of plant miRNA from RNA sequencing data

September 12, 2014 Comments Off on miRPlant – an integrated tool for identification of plant miRNA from RNA sequencing data 5,336 Views

Small RNA sequencing is commonly used to identify novel miRNAs and to determine their expression levels in plants. There are several miRNA identification tools for animals such as miRDeep, miRDeep2 and miRDeep*. miRDeep-P was developed to identify plant miRNA using ...

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Tag Archives: miRPlant

miRCat2 – Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

miRPlant – an integrated tool for identification of plant miRNA from RNA sequencing data

Unraveling the secrets of nerve regeneration: insights from RNA sequencing

New pan-cancer single-cell T cell atlas reveals new details of tumor microenvironment

scSemiAAE – a semi-supervised clustering model for single-cell RNA-seq data

Avidity Sequencing – high accuracy with low reagent consumption

scMEB – a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data

Researchers weave deeper understanding of diverse ancestry and gene expression

ExpressAnalyst – a unified platform for RNA-sequencing analysis in non-model species