An analysis of SARS-CoV-2 genome diversity in more than 1,000 people in the United Kingdom suggests that if viral mutations do arise, they can be transmitted in some cases but they rarely persist in...
Read More »RNA sequencing dispels fears human stem cells contain cancer-causing mutations
Pioneering new research has made a pivotal breakthrough that dispel concerns that human stem cells could contain cancer-causing mutations...
Read More »AssociVar – detecting mutations based on associations from direct RNA sequencing data
One of the key challenges in the field of genetics is the inference of haplotypes from next generation sequencing data. The MinION Oxford Nanopore...
Read More »RNA-Seq reveals DNA base editing induces substantial off-target RNA mutations
DNA base-editing methods have enabled direct point mutation correction in genomic DNA without generating any double-strand breaks (DSBs), but the potential off-target effects have limited the application of these methods. Adeno-associated viruses (AAV)...
Read More »FGMD – A novel approach for functional gene module detection in cancer
With the increasing availability of multi-dimensional biological datasets for the same samples (i.e., gene expression, microRNAs, copy numbers, mutations, methylations), it has now become possible to systematically understand the regulatory mechanisms operating in a cancer cell. For this task, it ...
Read More »ARC-seq – Accurate RNA consensus sequencing for high-fidelity detection of transcriptional mutagenesis-induced epimutations
Transcriptional mutagenesis (TM) due to misincorporation during RNA transcription can result in mutant RNAs, or epimutations, that generate proteins with altered properties. TM has long been hypothesized to play a role in aging, cancer, and viral and bacterial evolution. However, ...
Read More »DNA & RNA Sequencing Reveal New Genetic Insights That May Mean More Mesothelioma Treatment Options
from Surviving Mesothelioma by Alex Strauss Medical science has moved a step closer to better understanding the underlying genetic causes of malignant mesothelioma, a rare and hard-to-treat cancer. The news, published in the journal Nature Genetics, means that some mesothelioma ...
Read More »Children’s Hospital Los Angeles Announces Development of Unique Targeted DNA and RNA Sequencing Panel Designed for Pediatric Cancer Research
LOS ANGELES–(BUSINESS WIRE)–Children’s Hospital Los Angeles (CHLA) and Thermo Fisher Scientific have agreed to develop a next-generation sequencing (NGS)-based panel designed specifically for pediatric cancer research. The assay would be CHLA’s first NGS panel designed to target biomarkers associated with ...
Read More »Kleat – cleavage site analysis of transcriptomes
In eukaryotic cells, alternative cleavage of 3′ untranslated regions (UTRs) can affect transcript stability, transport and translation. For polyadenylated (poly(A)) transcripts, cleavage sites can be characterized with short-read sequencing using specialized library construction methods. However, for large-scale cohort studies as ...
Read More »Gene-Editing Guide
from Harvard Univeristy by By SUE McGREEVEY New method identifies genome-wide off-target effects of CRISPR-Cas Harvard Medical School investigators at Massachusetts General Hospital have developed a method for detecting unwanted DNA breaks—across the entire genome of human cells—induced by the ...
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