Don't Miss
  • Researchers develop online portal to show how biases in RNA sequences affect gene expression
  • Transcriptional recording enables noninvasive measurement of the intestinal tract with potential for biomedical research and future biomedical diagnostic applications
  • ActiveSVM – single-cell mRNA-seq data analysis with a minimal number of genes
  • scRNA-Seq draws a a roadmap to future personalized medicine for heart defects that develop before birth
  • DestVI – identification of continuums of cell types in spatial transcriptomics data
  • TAS-Seq – terminator-assisted solid-phase cDNA amplification and sequencing for scRNA-seq
  • Post-doc position available – single-cell multi-omics analyses in a first-in-human gene therapy trial
  • Single-cell map of heart failure suggests possible therapeutic targets
  • RNA sequencing reveals changed gene expression after heart surgery extends cardiomyocyte regeneration
  • RNA sequencing methods developer given career award

RNA-Seq BlogRNA-Seq Blog Transcriptome Research & Industry News

  • Home
  • News
    • Commentary
    • Headlines
    • Industry News
    • Grants / Funding
    • Information
    • Poll Results
    • Press Releases
    • Transcriptome Sequenced
  • Events
    • Conferences
    • Meetings
    • Webinars
    • Workshops
    • Projects
    • Local Events
  • Jobs
  • Technology
    • Methods
      • Workflows
      • RNA Extraction
      • Library Preparation
      • Spatial Transcriptomics
      • Statistical Analysis
      • Data Analysis
        • Analysis Pipelines
        • Annotation
        • Clouding Platforms
        • Data Normalization
        • Data Sets
        • Data Visualization
        • Databases
        • Expression and Quantification
        • Other Tools
        • Pathway Analysis
        • SNP Detection
        • Spatial Analysis
        • Splicing and Junction Mapping
        • Statistical Analysis
        • Transcriptome Assembly Tools
        • Unspliced Mapping Tools
    • New Products
      • Our Advertisers
    • Patents
    • Presentations
    • Publications
    • Review Publications
    • Web Tools
  • Data Analysis
    • Analysis Pipelines
    • Annotation
    • Clouding Platforms
    • Data Normalization
    • Data Sets
    • Data Visualization
    • Databases
    • Expression and Quantification
    • Other Tools
    • Pathway Analysis
    • SNP Detection
    • Splicing and Junction Mapping
    • Statistical Analysis
    • Transcriptome Assembly Tools
  • Blog
  • Reader Posts
  • Contact
    • Administration
    • Contribute News
    • Subscribe
    • Advertise
    • Request for RNA-Seq Services

Tag Archives: Pathview

Tutorial – RNA-seq differential expression & pathway analysis with Sailfish, DESeq2, GAGE, and Pathview

December 10, 2015 1 Comment 12,180 Views

rna-seq

Read More »

Stay Connected

Publications Trend

Recent RNA-SEQ Pubs

Processing human skin samples for single-cell assays
30 June 2022
Metastasis Related Epithelial-Mesenchymal Transition Signature Predicts Prognosis and Response to Immunotherapy in Gastric Cancer
30 June 2022
Single-Cell Sequencing Reveals that DBI is the Key Gene and Potential Therapeutic Target in Quiescent Bladder Cancer Stem Cells
30 June 2022
Transcriptional Basis for Haustorium Formation and Host Establishment in Hemiparasitic <em>Psittacanthus schiedeanus</em> Mistletoes
30 June 2022
Selection and Validation of Reference Genes for Pan-Cancer in Platelets Based on RNA-Sequence Data
30 June 2022
The Mechanism of Heat Stress Resistance During Spermatogenesis in Turpan Black Sheep
30 June 2022
G-protein Coupled Receptor 34 Promotes Gliomagenesis by Inducing Proliferation and Malignant Phenotype via TGF-Beta/Smad Signaling Pathway
30 June 2022
Modulation of Plant Development and Chilling Stress Responses by Alternative Splicing Events under Control of the Spliceosome Protein SmEb in Arabidopsis
30 June 2022
Nanoparticle single-cell multiomic readouts reveal that cell heterogeneity influences lipid nanoparticle-mediated messenger RNA delivery
29 June 2022
Transcriptomic modulation in response to an intoxication with deltamethrin in a population of Triatoma infestans with low resistance to pyrethroids
29 June 2022
The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis
29 June 2022
CircRNA-3302 promotes endothelial-to-mesenchymal transition via sponging miR-135b-5p to enhance KIT expression in Kawasaki disease
29 June 2022
Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells
29 June 2022
Identification of a differentiation-related prognostic nomogram based on single-cell RNA sequencing in clear cell renal cell carcinoma
29 June 2022
Comparative transcriptome analysis of Indian domestic duck reveals candidate genes associated with egg production
29 June 2022
High-resolution map of plastid-encoded RNA polymerase binding patterns demonstrates a major role of transcription in chloroplast gene expression
29 June 2022
A new method for the sampling and preservation of placental specimens in low-resource settings for the identification of <em>P. falciparum</em> and analysis of nucleic acids
29 June 2022
Mapping developmental paths of monkey primordial germ-like cells differentiation from pluripotent stem cells by single cell RNA sequencing analysis
29 June 2022
Upregulated lncARAT in Schwann cells promotes axonal regeneration by recruiting and activating proregenerative macrophages
29 June 2022
Bookend: precise transcript reconstruction with end-guided assembly
29 June 2022
Dual role of histone variant H3.3B in spermatogenesis: positive regulation of piRNA transcription and implication in X-chromosome inactivation
29 June 2022
Identification of stress-related genes by co-expression network analysis based on the improved turbot genome
29 June 2022
Complement C1QC as a potential prognostic marker and therapeutic target in colon carcinoma based on single-cell RNA sequencing and immunohistochemical analysis
29 June 2022
Pseudomonas phaseolicola preferentially modulates genes encoding leucine-rich repeat and malectin domains in the bean landrace G2333
29 June 2022
The AHNAK induces increased IL-6 production in CD4+T cells and serves as a potential diagnostic biomarker for recurrent pregnancy loss
29 June 2022
Multi-omics to characterize the functional relationships of R-loops with epigenetic modifications, RNAPII transcription and gene expression
28 June 2022
Integration of morphological, physiological and multi-omics analysis reveals a comprehensive mechanism for cuticular wax during development of greasiness in postharvest apples
28 June 2022
RNA-Seq analysis identifies alterations of the primary cilia gene SPAG17 and SOX9 locus non-coding RNAs in systemic sclerosis
28 June 2022
Single Cell Transcriptomics Reveals Dynamic Role of Smooth Muscle Cells and Enrichment of Immune Cell Subsets in Human Abdominal Aortic Aneurysms
28 June 2022
The heterologous expression of conserved Glycine max (soybean) mitogen activated protein kinase 3 (MAPK3) paralogs suppresses Meloidogyne incognita parasitism in Gossypium hirsutum (upland cotton)
28 June 2022
RiceNCexp: A Resource for Rice Non-coding RNA Co-Expression Atlas Based on Massive RNA-seq and Small-RNA seq Data
28 June 2022
Effects of homoeologous exchange on gene expression and alternative splicing in a newly formed allotetraploid wheat
28 June 2022
Acute Myeloid Leukemia: New Multiomics Molecular Signatures and Implications for Systems Medicine Diagnostics and Therapeutics Innovation
28 June 2022
An oncogenic JMJD6-DGAT1 axis tunes the epigenetic regulation of lipid droplet formation in clear cell renal cell carcinoma
28 June 2022
Determination of RNA-ligand interactions with the photoaffinity platform PEARL-seq
28 June 2022
Unsupervised cell functional annotation for single-cell RNA-seq
28 June 2022
Dicer deficiency impairs proliferation but potentiates anti-tumoral effect of macrophages in glioblastoma
28 June 2022
RNA-seq based elucidation of mechanism underlying Mesona chinensis Benth polysaccharide protected H<sub>2</sub>O<sub>2</sub>-induced oxidative damage in L02 cells
28 June 2022
A novel hypoxic lncRNA, HRL-SC, promotes the proliferation and migration of human dental pulp stem cells through the PI3K/AKT signaling pathway
28 June 2022
RNA-seq analysis of nasopharyngeal swabs from asymptomatic and mildly symptomatic COVID-19 patients
27 June 2022
Transcriptome analysis of walnut quality formation and color change mechanism of pellicle during walnut development
27 June 2022
High temporal resolution RNA-seq time course data reveals widespread synchronous activation between mammalian lncRNAs and neighbouring protein-coding genes
27 June 2022
Age-associated B cells contribute to the pathogenesis of rheumatoid arthritis by inducing activation of fibroblast-like synoviocytes via TNF-α-mediated ERK1/2 and JAK-STAT1 pathways
27 June 2022
GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases
27 June 2022
IDO1 plays a tumor-promoting role via MDM2-mediated suppression of the p53 pathway in diffuse large B-cell lymphoma
27 June 2022
TAS-Seq is a robust and sensitive amplification method for bead-based scRNA-seq
27 June 2022
High-throughput total RNA sequencing in single cells using VASA-seq
27 June 2022
Highly distinct genetic programs for peripheral nervous system formation in chordates
27 June 2022
An introduction to spatial transcriptomics for biomedical research
27 June 2022
scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneously
27 June 2022

News in Pictures

rna-seq
rna-seq
rna-seq
rna-seq
rna-seq
rna-seq
Lund University
rna-seq
rna-seq
rna-seq
rna-seq
rna-seq
aspen
rna-seq
rna-seq
rna-seq

recent visitors

Subscribe to our Newsletter


Email Frequency

RNA-Seq Products & Services

Most Shared Posts

  • From Cancer Sequencing Data to Neoantigen Prediction: A reusable pipeline using Snakemake
    Google +1 logo   Twitter logo   Facebook logo
  • Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose–response study designs
    Google +1 logo   Twitter logo   Facebook logo
  • Post-doc Position Available – Analyst Bioinformatics
    Google +1 logo   Twitter logo   Facebook logo
  • SnISOr-Seq – single-nuclei isoform RNA sequencing
    Google +1 logo   Twitter logo   Facebook logo
  • Scallop2 – accurate assembly of multi-end RNA-seq data with
    Google +1 logo   Twitter logo   Facebook logo
  • Popular
  • Recent
  • Comments
  • rna-seq

    RPKM, FPKM and TPM, clearly explained

    July 22, 2015
  • rna-seq

    How to Analyze RNA-Seq Data?

    October 10, 2016
  • rna-seq

    Visualization of nucleotide substitutions in the (micro)transcriptome

    August 13, 2014
  • rna-seq

    Comparison of TMM (edgeR), RLE (DESeq2), and MRN Normalization Methods

    October 6, 2016
  • rna-seq

    Life Technologies Releases New Research Tool: Oncomine NGS RNA-Seq Gene Expression Browser

    April 8, 2014
  • rna-seq

    Researchers develop online portal to show how biases in RNA sequences affect gene expression

    10 hours ago
  • rna-seq

    Transcriptional recording enables noninvasive measurement of the intestinal tract with potential for biomedical research and future biomedical diagnostic applications

    11 hours ago
  • rna-seq

    ActiveSVM – single-cell mRNA-seq data analysis with a minimal number of genes

    1 day ago
  • rna-seq

    scRNA-Seq draws a a roadmap to future personalized medicine for heart defects that develop before birth

    1 day ago
  • rna-seq

    DestVI – identification of continuums of cell types in spatial transcriptomics data

    2 days ago
  • Lilly: I thinks both of your explanations make sense. As you said,...
  • Kathi Gosche: I would like advertising rates, please....
  • Isatou Sarr: Hi, what is the best platform to use when you need to analys...
  • Isatou Sarr: Hi, do you add any extra lysis step/enhancers during sample...
  • Isatou Sarr: Hi, small nucleotide sequences have been identified having t...

Categories

Archives

What is RNA-Seq?

long RNAs are first converted into a library of cDNA fragments through either RNA fragmentation or DNA fragmentation. Sequencing adaptors (blue) are subsequently added to each cDNA fragment and a short sequence is obtained from each cDNA using high-throughput sequencing technology. The resulting sequence reads are aligned with the reference genome or transcriptome, and classified as three types: exonic reads, junction reads and poly(A) end-reads. These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009)


RNA-Seq

Recent News

  • rna-seq

    Researchers develop online portal to show how biases in RNA sequences affect gene expression

    10 hours ago
  • rna-seq

    Transcriptional recording enables noninvasive measurement of the intestinal tract with potential for biomedical research and future biomedical diagnostic applications

    11 hours ago
  • rna-seq

    ActiveSVM – single-cell mRNA-seq data analysis with a minimal number of genes

    1 day ago
  • rna-seq

    scRNA-Seq draws a a roadmap to future personalized medicine for heart defects that develop before birth

    1 day ago
  • rna-seq

    DestVI – identification of continuums of cell types in spatial transcriptomics data

    2 days ago
  • rna-seq

    TAS-Seq – terminator-assisted solid-phase cDNA amplification and sequencing for scRNA-seq

    2 days ago
  • Lund University

    Post-doc position available – single-cell multi-omics analyses in a first-in-human gene therapy trial

    3 days ago

Subscribe to the RNA-Seq Blog


Email Frequency

Social Networking Pages


RNA-Seq
  • 7,859 Followers
  • 2,079 Fans
© Copyright 2009- , All Rights Reserved. | Designed by Go Big - Online Presence Creations