Tag Archives: pipeline

Unleash the power within RNA-seq

RNA-sequencing (RNA-seq) is an essential technique for transcriptome studies, hundreds of analysis tools have been developed since it was debuted. Although recent efforts have attempted to assess the latest available tools, they have not evaluated the analysis workflows comprehensively to ...

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QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs

http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1601-4 Genome-wide miRNA expression data can be used to study miRNA dysregulation comprehensively. Although many open-source tools for microRNA (miRNA)-seq data analyses are available, challenges remain in accurate miRNA quantification from large-scale miRNA-seq dataset. We implemented a pipeline called QuickMIRSeq ...

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