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Tag Archives: Plant Biology

Researchers make improvements to the rice genome annotation through large-scale analysis of RNA-Seq and proteomics datasets

October 9, 2018 Leave a comment 1,451 Views

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Rice (Oryza sativa) is one of the most important worldwide crops. The genome has been available for over 10 years and has undergone several rounds of annotation. University of Liverpool researchers...

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Recent RNA-SEQ Pubs

Neurodevelopmental and transcriptomic effects of CRISPR/Cas9-induced somatic <em>orco</em> mutation in honey bees
5 March 2021
RNA helicase DDX5 acts as a critical regulator for survival of neonatal mouse gonocytes
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Transcriptomic data showing differentially expressed genes between Notch3 and Notch4 deleted mice
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Comparative transcriptome analysis of roots, stems, and leaves of <em>Pueraria lobata</em> (Willd.) Ohwi: identification of genes involved in isoflavonoid biosynthesis
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The long non-coding RNA MEG3 plays critical roles in the pathogenesis of cholesterol gallstone
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Evaluation of key miRNAs during early pregnancy in Kazakh horse using RNA sequencing
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What is RNA-Seq?

long RNAs are first converted into a library of cDNA fragments through either RNA fragmentation or DNA fragmentation. Sequencing adaptors (blue) are subsequently added to each cDNA fragment and a short sequence is obtained from each cDNA using high-throughput sequencing technology. The resulting sequence reads are aligned with the reference genome or transcriptome, and classified as three types: exonic reads, junction reads and poly(A) end-reads. These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009)


RNA-Seq

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    Learn more about available bioinformatics tools and pipelines to analyze RNA sequencing data

    14 hours ago
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    New search engine for single cell atlases

    15 hours ago
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    Yale researchers identify tumor reactive immune cells with RNA sequencing to help fight against advanced melanoma

    16 hours ago
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    Uncovering the Anti-Myeloma Resistance Files

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