Step-by-step construction of gene co-expression networks from high-throughput RNA sequencing data

March 15, 2018 Leave a comment 11,805 Views

The rapid increase in the availability of transcriptomics data generated by RNA sequencing represents both a challenge and an opportunity for biologists without bioinformatics training. The challenge is handling, integrating, and interpreting these...

51% of non-canonical splice sites are not annotated in GENCODE

August 18, 2014 Comments Off on 51% of non-canonical splice sites are not annotated in GENCODE 4,562 Views

Scientists at the Pontifical Catholic University of Chile have uncovered the diversity of non-canonical splice sites at the human transcriptome using deep transcriptome profiling. They mapped a total of 3.7 billion human RNA-seq reads and developed a set of stringent ...

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Tag Archives: Pontifical Catholic University of Chile

Step-by-step construction of gene co-expression networks from high-throughput RNA sequencing data

51% of non-canonical splice sites are not annotated in GENCODE

Novel guidelines help select optimal deconvolution method

An RNA-Seq framework for profiling target selectivity and physiological effects of antisense peptide nucleic acids (PNAs)

Single cell sequencing unravels molecular identity of rare renal cell types

SMIXnorm – fast and accurate RNA-Seq data normalization for FFPE Samples

TEA-seq – simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility

First use of both bulk and single-cell RNA sequencing of human bladder tumors to study resistance to immunotherapy

Post-doc position available – transcriptome bioinformatics and RNA sequencing