Researchers make improvements to the rice genome annotation through large-scale analysis of RNA-Seq and proteomics datasets

October 9, 2018 Leave a comment 1,933 Views

Rice (Oryza sativa) is one of the most important worldwide crops. The genome has been available for over 10 years and has undergone several rounds of annotation. University of Liverpool researchers...

Using galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

August 25, 2014 Comments Off on Using galaxy-P to leverage RNA-Seq for the discovery of novel protein variations 5,727 Views

Current practice in mass spectrometry (MS)-based proteomics is to identify peptides by comparison of experimental mass spectra with theoretical mass spectra derived from a reference protein database; however, this strategy necessarily fails to detect peptide and protein sequences that are ...

Incorporating RNA-Seq data to improve sensitivity of protein identification by tandem MS

July 17, 2014 Leave a comment 4,182 Views

Tandem mass spectrometry (MS/MS) followed by database search is the method of choice for protein identification in proteomic studies. Database searching methods employ spectral matching algorithms and statistical models to identify and quantify proteins in a sample. In general, these ...

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Researchers make improvements to the rice genome annotation through large-scale analysis of RNA-Seq and proteomics datasets

Using galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Incorporating RNA-Seq data to improve sensitivity of protein identification by tandem MS

MATQ_Drop – Multiple-Annealing-and-Tailing-based Quantitative scRNA-seq in Droplets

Featured RNA-Seq Job – Research Technician II – Single Cell RNA Sequencing

IMMUcan scDB – a fully integrated scRNA-seq database exclusively dedicated to human cancer

Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

Mutant KRAS signaling drives alternative splicing in lung cancer cells

Single cell RNA-sequencing identifies cause for loss of smell in long COVID patients

ESPRESSO – robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data