Researchers from the Scripps Research Institute describe a method for making Illumina-compatible sequencing libraries from RNA. This protocol can be used for standard RNAseq analysis for detecting differentially expressed genes. In addition, this protocol is ideally suited for adapting to ...
Read More »CoverageAnalyzer (CAn) – A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles
Combination of reverse transcription (RT) and deep sequencing has emerged as a powerful instrument for the detection of RNA modifications, a field that has seen a recent surge in activity because of its importance in gene regulation. Recent studies yielded ...
Read More »Highly parallel direct RNA sequencing on an array of nanopores
Ribonucleic acid sequencing can allow us to monitor the RNAs present in a sample. This enables us to detect the presence and nucleotide sequence of viruses, or to build a picture of how active transcriptional processes are changing — information ...
Read More »New proofreading enzyme increases precision and fidelity of RNA sequencing
AUSTIN, Texas — For 3 billion years, one of the major carriers of information needed for life, RNA, has had a glitch that creates errors when making copies of genetic information. Researchers at The University of Texas at Austin have ...
Read More »RNA-Seq workflow for comprehensive profiling of reverse transcription encounters with m1A
The combination of Reverse Transcription (RT) and high-throughput sequencing has emerged as a powerful combination to detect modified nucleotides in RNA via analysis of either abortive RT-products or of the incorporation of mismatched dNTPs into cDNA. Here researchers from the ...
Read More »By removing modified nucleotides that block reverse transcriptase, two methods have now made tRNAs amenable to RNA-seq.
from Nature Methods by Jeremy E Wilusz The use of high-throughput RNA sequencing (RNA-seq) has revealed an extraordinarily diverse population of functional RNAs present in cells. However, current approaches poorly detect RNAs that are highly modified and/or extensively folded, such ...
Read More »Extendable blocking probe in reverse transcription for analysis of RNA variants with superior selectivity
Researchers from the Minerva Foundation Institute for Medical Research, Finland have developed the first strategy to use a competitive Extendable Blocking Probe (ExBP) for allele-specific priming with superior selectivity at the stage of reverse transcription. In order to analyze highly ...
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