rMATS-DVR – rMATS discovery of Differential Variants in RNA

March 29, 2017 Leave a comment 4,764 Views

RNA sequences of a gene can have single nucleotide variants (SNVs) due to single nucleotide polymorphisms (SNPs) in the genome, or RNA editing events within the RNA. By comparing RNA-seq data of a given cell type before and after a ...

rMATS – Detection of differential alternative splicing from replicate RNA-Seq data

December 9, 2014 Leave a comment 6,637 Views

Ultra-deep RNA sequencing (RNA-Seq) has become a powerful approach for genome-wide analysis of pre-mRNA alternative splicing. Researchers from UCLA previously developed multivariate analysis of transcript splicing (MATS), a statistical method for detecting differential alternative splicing between two RNA-Seq samples. Here ...

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Tag Archives: rMATS

rMATS-DVR – rMATS discovery of Differential Variants in RNA

rMATS – Detection of differential alternative splicing from replicate RNA-Seq data

CircAID-p-seq – a PCR-free library preparation for selective 3′ phospho-RNA sequencing

Nanopore ReCappable Sequencing (NRCeq) – a new technique that can identify capped full-length RNAs

CLEARER – a machine learning approach for predicting essential genes across eukaryotes

scRNA-Seq reveals how genetic ancestry shapes immune response to influenza virus

Single-cell RNA sequencing and bioinformatics as tools to decipher cancer heterogenicity and mechanisms of drug resistance

Microwell-seq – high-throughput screening with single-cell transcriptional profiling

Postdoc position available – computational biology: tumour heterogeneity and resistance mechanisms