RiboDiff – Detecting Changes of mRNA Translation Efficiency from Ribosome Footprints

September 21, 2016 Leave a comment 3,519 Views

Deep sequencing based ribosome footprint profiling can provide novel insights into the regulatory mechanisms of protein translation. However, the observed ribosome profile is fundamentally confounded by transcriptional activity. In order to decipher principles of translation regulation, tools that can reliably ...

SplAdder – Identification, quantification and testing of alternative splicing events from RNA-Seq data

February 10, 2016 Leave a comment 3,965 Views

Understanding the occurrence and regulation of alternative splicing (AS) is a key task towards explaining the regulatory processes that shape the complex transcriptomes of higher eukaryotes. With the advent of high-throughput sequencing of RNA (RNA-Seq), the diversity of AS transcripts ...

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Tag Archives: Sloan-Kettering Institute

RiboDiff – Detecting Changes of mRNA Translation Efficiency from Ribosome Footprints

SplAdder – Identification, quantification and testing of alternative splicing events from RNA-Seq data

Upcoming Workshop – Single Cell RNA-Seq Data Analysis

Single cell RNA-Seq provides new insights into the mechanism of vaccine-induced T cell immunity

Ribo-depletion in RNA-Seq – Which ribosomal RNA depletion method works best?

SCEED – design and analysis of single cell RNA-seq experiments for cell type identification

HPV RNA-Seq enhances ability to predict risk of developing cervical cancer

Removing batch effects in scRNA-seq data

Upcoming Workshop – Advanced Transcriptomics (RNA-Seq) Analysis