Cheaper RNA-seq: but you might have to give up strandeness and splicing

March 18, 2014 Leave a comment 16,976 Views

from CoreGenomics by James Hadfield I’m going to start this post by saying something that may be controversial “splicing analysis is a niche, strandedness is useful in a minority of cases and that most RNA-seq users are only interested in ...

Methods for Analysis of RNA-Seq Datasets to Study Alternative Splicing

March 5, 2014 Leave a comment 6,337 Views

Alternative splicing is an important gene regulatory mechanism that dramatically increases the complexity of the proteome. However, how alternative splicing is regulated and how transcription and splicing are coordinated are still poorly understood, and functions of transcript isoforms have been ...

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Tag Archives: splicing isoforms

Cheaper RNA-seq: but you might have to give up strandeness and splicing

Methods for Analysis of RNA-Seq Datasets to Study Alternative Splicing

SNuBar-ATAC – simple oligonucleotide-based multiplexing of single-cell chromatin accessibility

Single cell RNA sequencing based identification and profiling of Leishmania parasitized host cells

Direct RNA sequencing reveals SARS-CoV-2 m6A sites

Single-cell RNA sequencing identifies of early-stage lung cancer biomarkers from circulating blood

scRNA-seq – Introduction to single cell RNA-seq data analysis

m6A-seq2 – multiplexed profiling facilitates robust m6A quantification at site, gene and sample resolution

Scientists use m6A RNA sequencing to gain new understanding of how brain cells talk