Variations in sample quality are frequently encountered in small RNA-sequencing experiments, and pose a major challenge in a differential expression analysis. Removal of high variation samples reduces noise, but at a cost of reducing power, thus limiting our ability to ...
Read More »Featured RNA-Seq Job – Sr Research Associate- Sequencing Platforms
Lawrence Berkeley National Laboratory (Berkeley, CA) The Department of Energy (DOE) Joint Genome Institute in Walnut Creek, CA (a division of the Lawrence Berkeley National Lab) is searching for an experienced Research Associate. Under general direction, performs research assignments that ...
Read More »Reduction of Gene Expression Variability from Single Cells to Populations follows Simple Statistical Laws
Recent studies on single cells and population transcriptomics have revealed striking differences in global gene expression distributions. Single cells display highly variable expressions between cells, while cell populations present deterministic global patterns. The mechanisms governing the reduction of transcriptome-wide variability ...
Read More »Comparative evaluation of gene set analysis approaches for RNA-Seq data
Over the last few years transcriptome sequencing (RNA-Seq) has almost completely taken over microarrays for high-throughput studies of gene expression. Currently, the most popular use of RNA-Seq is to identify genes which are differentially expressed between two or more conditions. ...
Read More »PANDORA – Systematic integration of RNA-Seq statistical algorithms
RNA-Seq is gradually becoming the standard tool for transcriptomic expression studies in biological research. Although considerable progress has been recorded in the development of statistical algorithms for the detection of differentially expressed genes using RNA-Seq data, the list of detected ...
Read More »