Splicify – a proteogenomic pipeline to detect differentially expressed protein isoforms based on integrating RNA-Seq and Mass Spec data

August 1, 2017 Leave a comment 4,327 Views

Proteogenomics, i.e. comprehensive integration of genomics and proteomics data, is a powerful approach identifying novel protein biomarkers. This is especially the case for proteins that differ structurally between disease and control conditions. As tumor development is associated with aberrant splicing, ...

Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs

October 28, 2014 Leave a comment 6,044 Views

Tandem mass spectrometry (MS/MS) has been used to improve genome annotation in various organisms. The classical approach is to construct comprehensive theoretical peptide database with six frame translation model from the whole open reading frame (ORF) of a genome, and ...

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Tag Archives: Tandem mass spectrometry

Splicify – a proteogenomic pipeline to detect differentially expressed protein isoforms based on integrating RNA-Seq and Mass Spec data

Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs

RNA-Seq links severe COVID-19 with molecular signatures of brain aging

Call for Papers – Applications of RNA-Seq in Cancer and Tumor Research

Exai Bio’s RNA sequencing-based liquid biopsy platform delivers promising data on detecting breast cancer at its earliest stages

Transcriptomic technique may help identify infections after knee and hip replacement

AS-CMC – a pan-cancer database of alternative splicing for molecular classification of cancer

Data analysis guidelines for single-cell RNA-seq in biomedical studies and clinical applications

Featured RNA-Seq Job – CCG Single-Cell/-Nucleus Sequencing Group Leader, Scientist II