Splicify – a proteogenomic pipeline to detect differentially expressed protein isoforms based on integrating RNA-Seq and Mass Spec data

August 1, 2017 Leave a comment 4,032 Views

Proteogenomics, i.e. comprehensive integration of genomics and proteomics data, is a powerful approach identifying novel protein biomarkers. This is especially the case for proteins that differ structurally between disease and control conditions. As tumor development is associated with aberrant splicing, ...

Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs

October 28, 2014 Leave a comment 5,706 Views

Tandem mass spectrometry (MS/MS) has been used to improve genome annotation in various organisms. The classical approach is to construct comprehensive theoretical peptide database with six frame translation model from the whole open reading frame (ORF) of a genome, and ...

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Tag Archives: Tandem mass spectrometry

Splicify – a proteogenomic pipeline to detect differentially expressed protein isoforms based on integrating RNA-Seq and Mass Spec data

Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs

Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose–response study designs

Massively parallel direct RNA sequencing enables scientists to build ‘valves’ in DNA to shape biological information flows

Featured RNA-Seq Job – Research Associate/Senior Research Associate (Single Cell RNA Sequencing Library Preparation)

Upcoming Webinar – Improving single cell RNA-seq workflow efficiency to scale clinical research

Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data

SwabSeq – Scalable, Sensitive and Fast COVID-19 Testing

Single Cell Discoveries and BioTuring announce collaboration to improve single-cell sequencing research