SalmonTE – An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data

December 11, 2017 Leave a comment 7,848 Views

Transposable elements (TEs) are DNA sequences which are capable of moving from one location to another and represent a large proportion (45%) of the human genome. TEs have functional roles in a variety of biological phenomena such as cancer, neurodegenerative ...

TEtranscripts – A package for including transposable elements in differential expression analysis of RNA-Seq datasets

August 3, 2015 Leave a comment 7,099 Views

Most RNA-seq data analysis software packages are not designed to handle the complexities involved in properly apportioning short sequencing reads to highly repetitive regions of the genome. These regions are often occupied by transposable elements (TEs), which make up between ...

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Tag Archives: TEtranscripts

SalmonTE – An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data

TEtranscripts – A package for including transposable elements in differential expression analysis of RNA-Seq datasets

scMEB – a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data

Researchers weave deeper understanding of diverse ancestry and gene expression

ExpressAnalyst – a unified platform for RNA-sequencing analysis in non-model species

Celloscope – a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

gExcite – a start-to-end framework for single-cell gene expression, hashing, and antibody analysis

RNA-Seq reveals orchids’ ability to grow on other plants independently evolved multiple times

New RNA sequencing method reveals bacterial reaction to antibiotics in five minutes