Tag Archives: tophat

Date: Thursday, April 20, 2017 Time: 10:00am – 12:00pm Location: Cushing/Whitney Medical Library, Room 103 TCC, 333 Cedar St, New Haven CT 06520 Campus: Medical School Categories: Bioinformatics In Collaboration with Robert Bjornson, Ph.D, Yale Center for Research Computing This ...

Long intergenic noncoding RNAs (lincRNAs) , which are larger than 200 nucleotides and transcribed from the intergenic regions of protein coding genes, have been shown by accumulating findings to be widely expressed and extensively functional in many cellular processes. Nevertheless, ...

Repetitive elements (REs) comprise 40–60% of the mammalian genome and have been shown to epigenetically influence the expression of genes through the formation of fusion transcript (FTs). Researchers from the National Institute of Environmental Health Sciences previously showed that an intracisternal ...

Large-scale cancer genomics initiatives and next-generation sequencing for transcriptome profiling allow for detailed molecular characterization of tumors, and provide opportunities for clinical tools to improve diagnosis, prognosis, and treatment decisions. Laboratory information, data management, and data sharing in large-scale genomics ...

The recent advances in high throughput RNA sequencing (RNA-Seq) have generated huge amounts of data in a very short span of time for a single sample. These data have required the parallel advancement of computing tools to organize and interpret ...

The study of RNA has been dramatically improved by the introduction of Next Generation Sequencing platforms allowing massive and cheap sequencing of selected RNA fractions, also providing information on strand orientation (RNA-Seq). The complexity of transcriptomes and of their regulative ...

by Stephen Turner Overview of RNA-seq quality control and data analysis using TopHat, Cufflinks, and CummeRbund. Given at the CSHL DNA Learning Center RNA-seq for the Next Generation (http://www.rnaseqforthenextgeneration.org/)

Boston, MA – June 23rd 2015 – 09:00 – 12:00 Cole Trapnell is the original developer of the most widely used tools for RNA-Seq analysis including TopHat and Cufflinks, therefore this is a fantastic opportunity to address your challenges and ...

This is the material for two workshops given at MSU by Titus Brown and Matt Scholz. The first workshop (Dec 4/5) was on model organism mRNAseq, and the second workshop (Dec 10/11) will be on semi-model organism mRNAseq. Both workshops ...

This lecture is a part of an online course that was given on Coursera during the fall of 2013 by the Ma’ayan Lab. https://class.coursera.org/netsysbio-001